SMTL ID : 5vwh.1

HLA-B*58:01 presenting LSSPVTKSW

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.65 Å

Oligo State

hetero-1-1-mer

Ligands

1 x LEU- SER- SER- PRO- VAL- THR- LYS- SER- TRP: Nonamer peptide: LEU-SER-SER-PRO-VAL-THR-LYS-SER-TRP(Non-covalent)

LEU-SER-SER-PRO-VAL-THR-LYS-SER-TRP.1: 27 residues within 4Å: Chain A: M.5, Y.7, Y.9, Y.59, E.63, N.66, M.67, T.73, N.77, I.80, Y.84, I.95, R.97, Y.99, D.114, S.116, A.117, Y.123, T.143, K.146, W.147, Q.155, L.156, Y.159, L.163, W.167, Y.171 34 PLIP interactions: 34 interactions with chain A Hydrophobic interactions: A:Y.59, A:N.77, A:I.80, A:I.95, A:I.95, A:W.147, A:Q.155, A:L.156, A:L.163, A:W.167 Hydrogen bonds: A:E.63, A:N.66, A:N.77, A:N.77, A:Y.84, A:Y.99, A:S.116, A:S.116, A:Y.171, A:Y.171 Water bridges: A:Y.7, A:Y.7, A:Y.9, A:N.66, A:S.70, A:T.73, A:Y.74, A:R.97, A:R.97, A:R.97, A:W.147, A:Q.155 Salt bridges: A:K.146 pi-Stacking: A:Y.123

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Illing, P.T. et al., HLA-B57 micropolymorphism defines the sequence and conformational breadth of the immunopeptidome. Nat Commun (2018)

Release Date

2018-10-03

Peptides

HLA class I histocompatibility antigen, B-58 alpha chain: A
Beta-2-microglobulin: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

HLA class I histocompatibility antigen, B-58 alpha chain

Beta-2-microglobulin

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