SMTL ID : 5wmq.1

Crystal Structure of HLA-B8 in complex with ELR, an Influenza A virus peptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.40 Å

Oligo State

hetero-1-1-mer

Ligands

1 x GLU- LEU- ARG- SER- ARG- TYR- TRP- ALA- ILE: ELR peptide from IAV(Non-covalent)

GLU-LEU-ARG-SER-ARG-TYR-TRP-ALA-ILE.1: 32 residues within 4Å: Chain A: Y.7, D.9, S.24, F.36, Y.59, R.62, N.63, I.66, F.67, N.70, T.73, D.74, E.76, S.77, N.80, L.81, Y.84, Y.99, N.114, Y.116, Y.123, T.143, K.146, W.147, A.150, V.152, Q.155, D.156, Y.159, T.163, W.167, Y.171 53 PLIP interactions: 53 interactions with chain A Hydrophobic interactions: A:Y.7, A:F.36, A:I.66, A:F.67, A:N.70, A:E.76, A:L.81, A:Y.84, A:Y.99, A:Y.116, A:Y.123, A:W.147, A:A.150, A:V.152, A:Y.159, A:Y.159, A:T.163, A:W.167 Hydrogen bonds: A:Y.7, A:Y.59, A:N.63, A:N.63, A:N.70, A:N.70, A:T.73, A:S.77, A:N.80, A:Y.99, A:Y.99, A:N.114, A:N.114, A:Y.116, A:Y.116, A:K.146, A:Y.159, A:Y.171, A:Y.171 Water bridges: A:D.9, A:D.9, A:D.9, A:D.9, A:I.23, A:S.24, A:D.74, A:S.97, A:Y.99, A:Y.99 Salt bridges: A:D.9, A:R.62, A:D.74, A:K.146, A:D.156 pi-Cation interactions: A:Y.99

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rowntree, L.C. et al., Inability To Detect Cross-Reactive Memory T Cells Challenges the Frequency of Heterologous Immunity among Common Viruses. J. Immunol. (2018)

Release Date

2018-06-06

Peptides

HLA class I histocompatibility antigen, B-8 alpha chain: A
Beta-2-microglobulin: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

HLA class I histocompatibility antigen, B-8 alpha chain

Beta-2-microglobulin

Related Entries With Identical Sequence