SMTL ID : 5wmr.1

Crystal Structure of HLA-B8 in complex with QIK, a CMV peptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.58 Å

Oligo State

hetero-1-1-mer

Ligands

1 x GLN- ILE- LYS- VAL- ARG- VAL- ASP- MET- VAL: QIK peptide from CMV(Non-covalent)

GLN-ILE-LYS-VAL-ARG-VAL-ASP-MET-VAL.1: 32 residues within 4Å: Chain A: M.5, Y.7, D.9, F.22, F.36, Y.59, R.62, N.63, I.66, F.67, N.70, T.73, D.74, E.76, S.77, N.80, L.81, Y.84, S.97, Y.99, N.114, Y.116, T.143, K.146, W.147, A.150, V.152, D.156, Y.159, T.163, W.167, Y.171 40 PLIP interactions: 40 interactions with chain A Hydrophobic interactions: A:F.36, A:N.63, A:I.66, A:F.67, A:T.73, A:L.81, A:Y.99, A:T.143, A:W.147, A:V.152, A:Y.159, A:Y.159, A:Y.159, A:T.163, A:W.167 Hydrogen bonds: A:Y.7, A:R.62, A:R.62, A:N.63, A:N.63, A:N.70, A:N.70, A:T.73, A:S.77, A:N.80, A:Y.84, A:S.97, A:Y.99, A:K.146, A:D.156, A:Y.171, A:Y.171 Water bridges: A:D.74, A:S.97, A:Y.99, A:Y.116, A:D.156 Salt bridges: A:D.9, A:D.74, A:K.146

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rowntree, L.C. et al., Inability To Detect Cross-Reactive Memory T Cells Challenges the Frequency of Heterologous Immunity among Common Viruses. J. Immunol. (2018)

Release Date

2018-06-06

Peptides

HLA class I histocompatibility antigen, B-8 alpha chain: A
Beta-2-microglobulin: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

HLA class I histocompatibility antigen, B-8 alpha chain

Beta-2-microglobulin

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