SMTL ID : 6pvx.1 (1 other biounit)

RNase A in complex with p5U

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.55 Å

Oligo State

monomer

Ligands

2 x U5F: 5'-O-[(R)-hydroxy{[(S)-hydroxy{[(S)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]oxy}phosphoryl]oxy}phosphoryl]oxy}phosphoryl]uridine(Non-covalent)

U5F.1: 8 residues within 4Å: Chain A: H.12, K.41, V.43, N.44, T.45, K.66, F.120 Ligands: U5F.2 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:V.43 Hydrogen bonds: A:K.41, A:T.45, A:T.45, A:T.45, A:F.120 Water bridges: A:Q.11, A:K.66, A:S.123 Salt bridges: A:K.66, A:K.66, A:K.66 U5F.2: 14 residues within 4Å: Chain A: K.7, R.10, Q.11, L.35, K.41, C.65, N.67, Q.69, N.71, A.109, E.111, V.118, H.119 Ligands: U5F.1 19 PLIP interactions: 19 interactions with chain A Hydrophobic interactions: A:H.119 Hydrogen bonds: A:Q.11, A:N.67, A:Q.69, A:N.71, A:V.118 Water bridges: A:E.2, A:E.2, A:Q.69, A:E.111 Salt bridges: A:K.7, A:K.7, A:K.7, A:K.7, A:K.7, A:R.10, A:K.41, A:K.41, A:H.119

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shepard, S.M. et al., Nucleoside Tetra- and Pentaphosphates Prepared Using a Tetraphosphorylation Reagent Are Potent Inhibitors of Ribonuclease A. J.Am.Chem.Soc. (2019)

Release Date

2019-11-06

Peptides

Ribonuclease pancreatic: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Ribonuclease pancreatic

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