4rte.1 | SWISS-MODEL Template Library

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SMTL ID : 4rte.1 (1 other biounit)

The X-ray structure of bovine pancreatic ribonuclease incubated in the presence of an excess of cisplatin (1:10 ratio)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

monomer

Ligands

4 x CPT: Cisplatin(Non-covalent)(Covalent)

CPT.1:	6 residues within 4Å: Chain A: Q.11, H.12, V.118, H.119, F.120 Ligands: CL.7 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.11, A:V.118 Water bridges: A:V.118 Metal complexes: A:H.119
CPT.2:	2 residues within 4Å: Chain A: Y.76, H.105 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:H.105
CPT.3:	6 residues within 4Å: Chain A: D.14, S.16, Y.25, Q.28, M.29 Ligands: CPT.4 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.17 Water bridges: A:R.33
CPT.4:	3 residues within 4Å: Chain A: M.29, S.32 Ligands: CPT.3 No protein-ligand interaction detected (PLIP)

3 x CL: CHLORIDE ION(Non-functional Binders)

CL.5:	2 residues within 4Å: Chain A: T.3, A.5 Ligand excluded by PLIP
CL.6:	4 residues within 4Å: Chain A: H.12, N.44, T.45, F.120 Ligand excluded by PLIP
CL.7:	5 residues within 4Å: Chain A: Q.11, H.12, H.119, F.120 Ligands: CPT.1 Ligand excluded by PLIP

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Picone, D. et al., Platinated oligomers of bovine pancreatic ribonuclease: Structure and stability. J.Inorg.Biochem. (2015)

Release Date

2015-03-25

Peptides

Ribonuclease pancreatic: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Ribonuclease pancreatic

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1a2w.1 | 1afk.1 | 1afk.2 | 1afl.1 | 1afl.2 | 1afu.1 | 1afu.2 | 1aqp.1 | 1bel.1 | 1bzq.1 | 1bzq.2 | 1bzq.3 | 1bzq.4 | 1dfj.1 | 1eos.1 | 1eos.2 | 1eow.1 | 1f0v.1 | 1f0v.2 | 1f0v.3 | 1f0v.4 | 1fs3.1 | 1jn4.1 | 1jn4.2 | 1js0.1 | 1jvt.1 | 1jvt.2 | 1jvu.1 | 1jvu.2 | 1jvv.1 more...less...

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