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SMTL ID : 1f0v.1 (3 other biounits)

Crystal structure of an Rnase A dimer displaying a new type of 3D domain swapping

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

1 x DC- DG: 5'-D(*CP*G)-3'(Non-covalent)

DC-DG.1:

7 residues within 4Å:

Chain A: H.12, V.43, N.44, T.45, R.85, E.86
Ligands: PO4.2

Protein-ligand interaction information (PLIP) not available

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.2:

4 residues within 4Å:

Chain A: Q.11, H.12, K.41
Ligands: DC-DG.1

4 PLIP interactions:

4 interactions with chain A

Hydrogen bonds: A:Q.11
Water bridges: A:H.12
Salt bridges: A:H.12, A:K.41

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.3:	3 residues within 4Å: Chain A: Q.69, T.70, N.71 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.70
GOL.4:	3 residues within 4Å: Chain A: S.50, A.52, D.53 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.50
GOL.5:	1 residues within 4Å: Chain A: N.103 2 PLIP interactions: 2 interactions with chain A Water bridges: A:N.103, A:N.103
GOL.6:	2 residues within 4Å: Chain A: R.39, P.42 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.39, A:R.39
GOL.7:	2 residues within 4Å: Chain A: S.23, T.99 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.99 Water bridges: A:A.20, A:T.99, A:Q.101
GOL.8:	1 residues within 4Å: Chain A: S.77 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.77 Water bridges: A:E.49, A:T.78, A:T.78

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Liu, Y.S. et al., A domain-swapped RNase A dimer with implications for amyloid formation. Nat.Struct.Biol. (2001)

Release Date

2001-02-21

Peptides

RIBONUCLEASE A: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

RIBONUCLEASE A

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