SMTL ID : 7qpw.1 (1 other biounit)

X-ray structure of the adduct obtained upon reaction of [cis-Rh2(OCOCH3)2(OCOCF3)2] with RNase A (1)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.15 Å

Oligo State

monomer

Ligands

1 x F5T: cis-bis(mi2-acetato-O, O')-(mi2-trifluoroacetato-O, O')-diaquo-dirhodium (II)(Non-covalent)

F5T.1: 4 residues within 4Å: Chain A: K.7, Q.11, V.118, H.119 13 PLIP interactions: 12 interactions with chain A, 1 Ligand-Water interactions Hydrophobic interactions: A:V.118 Hydrogen bonds: A:Q.11 Water bridges: A:K.7, A:K.7, A:K.7, A:K.7, A:F.120 Salt bridges: A:K.7, A:H.119, A:H.119, A:H.119 Metal complexes: A:H.119, H2O.6

1 x F3I: (mi2-acetato-O, O')-hexaaquo-dirhodium (II)(Non-covalent)

F3I.2: 2 residues within 4Å: Chain A: T.78, H.105 5 PLIP interactions: 3 interactions with chain A, 1 Ligand-Ligand interactions, 1 Ligand-Water interactions Water bridges: A:Q.74 Salt bridges: A:H.105 Metal complexes: A:H.105, F3I.2, H2O.7

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Loreto, D. et al., Reactivity of a fluorine-containing dirhodium tetracarboxylate compound with proteins. Dalton Trans (2022)

Release Date

2022-03-16

Peptides

Ribonuclease pancreatic: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
AAA

Ribonuclease pancreatic

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