7z6g.1 | SWISS-MODEL Template Library

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SMTL ID : 7z6g.1 (1 other biounit)

X-ray structure of the adduct obtained upon reaction of [Rh2(OCOCH3)(OCOCF3)3] with RNase A (2)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.71 Å

Oligo State

monomer

Ligands

1 x F3I: (mi2-acetato-O, O')-hexaaquo-dirhodium (II)(Non-covalent)

F3I.1:

3 residues within 4Å:

Chain A: Y.76, T.78, H.105

4 PLIP interactions:

4 interactions with chain A,

Hydrogen bonds: A:H.105
Water bridges: A:V.124
Salt bridges: A:H.105
Metal complexes: A:H.105

2 x RH: Rhodium(Non-covalent)(Non-functional Binders)

RH.2:	2 residues within 4Å: Chain A: H.119 Ligands: RH.3 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.119, H₂O.2, H₂O.5
RH.3:	1 residues within 4Å: Ligands: RH.2 No protein-ligand interaction detected (PLIP)

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Loreto, D. et al., Reactivity of a fluorine-containing dirhodium tetracarboxylate compound with proteins. Dalton Trans (2022)

Release Date

2023-03-22

Peptides

Ribonuclease pancreatic: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Ribonuclease pancreatic

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