SMTL ID : 8ggg.1 (1 other biounit)

RNase A-Adenosine 5'-Hexaphosphate (RNaseA.p6A)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.86 Å

Oligo State

monomer

Ligands

2 x ZF9: adenosine 5'-hexaphosphate(Non-covalent)

ZF9.1: 16 residues within 4Å: Chain A: K.7, Q.11, H.12, K.41, V.43, N.44, T.45, C.65, N.67, Q.69, N.71, A.109, E.111, V.118, H.119, F.120 25 PLIP interactions: 25 interactions with chain A Hydrogen bonds: A:Q.11, A:N.44, A:T.45, A:N.67, A:Q.69, A:N.71, A:N.71, A:F.120 Water bridges: A:K.7, A:K.7, A:K.41, A:V.43, A:T.45 Salt bridges: A:K.7, A:H.12, A:H.12, A:K.41, A:K.41, A:K.41, A:K.41, A:K.41, A:H.119, A:H.119, A:H.119 pi-Stacking: A:H.119 ZF9.2: 4 residues within 4Å: Chain A: Y.76, S.77, T.78, H.105 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:S.77, A:S.77, A:T.78, A:T.78 Water bridges: A:Y.76, A:T.78 Salt bridges: A:H.105, A:H.105, A:H.105 pi-Stacking: A:Y.76

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 2 residues within 4Å: Chain A: S.15, S.50 2 PLIP interactions: 2 interactions with chain A Water bridges: A:S.15, A:L.51

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Park, G. et al., Pentaphosphorylation via the Anhydride of Dihydrogen Pentametaphosphate: Access to Nucleoside Hexa- and Heptaphosphates and Study of Their Interaction with Ribonuclease A. Acs Cent.Sci. (2024)

Release Date

2024-03-13

Peptides

Ribonuclease pancreatic: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Ribonuclease pancreatic

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