SMTL ID : 6xhc.1 (1 other biounit)

Structure of glycinyl 5'-O-adenosine phosphoramidate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

monomer

Ligands

1 x V2G: 2-[[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl]amino]ethanoic acid(Non-covalent)

V2G.1: 12 residues within 4Å: Chain A: F.8, Q.11, H.12, C.65, N.67, Q.69, N.71, A.109, E.111, V.118, H.119, F.120 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:K.7, A:Q.11, A:N.67, A:N.71, A:N.71, A:H.119, A:F.120 Water bridges: A:Q.69, A:Q.69 Salt bridges: A:H.12 pi-Stacking: A:H.119

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jovanovic, D. et al., The Enzyme-Free Release of Nucleotides from Phosphoramidates Depends Strongly on the Amino Acid. Angew.Chem.Int.Ed.Engl. (2020)

Release Date

2020-12-02

Peptides

Ribonuclease pancreatic: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Ribonuclease pancreatic

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