SMTL ID : 6pyw.1

Crystal Structure of HLA-B*2705-W60A in complex with LRN, a self-peptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.38 Å

Oligo State

hetero-1-1-mer

Ligands

1 x LEU- ARG- ASN- GLN- SER- VAL- PHE- ASN- PHE: LRN peptide(Non-covalent)

LEU-ARG-ASN-GLN-SER-VAL-PHE-ASN-PHE.1: 30 residues within 4Å: Chain A: M.5, Y.7, H.9, T.24, E.45, Y.59, R.62, E.63, I.66, C.67, T.73, E.76, D.77, T.80, L.81, Y.84, L.95, Y.99, D.116, Y.123, T.143, K.146, W.147, V.152, Q.155, L.156, Y.159, E.163, W.167, Y.171 38 PLIP interactions: 38 interactions with chain A Hydrophobic interactions: A:Y.7, A:Y.59, A:I.66, A:I.66, A:T.73, A:D.77, A:L.81, A:L.95, A:D.116, A:T.143, A:W.147, A:W.147, A:V.152, A:V.152, A:Q.155, A:L.156, A:Y.159, A:W.167 Hydrogen bonds: A:Y.7, A:T.24, A:T.24, A:R.62, A:R.62, A:E.63, A:E.76, A:D.77, A:Y.84, A:Y.99, A:Y.171 Water bridges: A:T.73, A:D.77, A:D.77, A:T.80, A:Y.99, A:Q.155 Salt bridges: A:E.45, A:K.146 pi-Stacking: A:Y.123

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lim Kam Sian, T.C.C. et al., Allelic association with ankylosing spondylitis fails to correlate with human leukocyte antigen B27 homodimer formation. J.Biol.Chem. (2019)

Release Date

2019-11-27

Peptides

HLA class I histocompatibility antigen, B-27 alpha chain: A
Beta-2-microglobulin: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

HLA class I histocompatibility antigen, B-27 alpha chain

Beta-2-microglobulin

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