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SMTL ID : 6rk8.1

Fragment AZ-014 binding at the p53pT387/14-3-3 sigma interface

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

hetero-2-2-mer

Ligands

4 x MG: MAGNESIUM ION(Non-covalent)

MG.1:	1 residues within 4Å: Chain A: E.193 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:E.193
MG.2:	3 residues within 4Å: Chain A: R.90, E.91, E.94 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:E.94
MG.5:	1 residues within 4Å: Chain C: E.193 1 PLIP interactions: 1 interactions with chain C Metal complexes: C:E.193
MG.6:	3 residues within 4Å: Chain C: R.90, E.91, E.94 1 PLIP interactions: 1 interactions with chain C Metal complexes: C:E.94

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.3:	6 residues within 4Å: Chain A: E.88, Y.89, K.92 Chain C: M.6, K.14, F.30 Ligand excluded by PLIP
CL.7:	6 residues within 4Å: Chain A: M.6, K.14, F.30 Chain C: E.88, Y.89, K.92 Ligand excluded by PLIP

2 x K6N: 7-(3-azanyl-4-methyl-pyrazol-1-yl)-1-benzothiophene-2-carboximidamide(Non-covalent)

K6N.4:	6 residues within 4Å: Chain A: E.19, C.43, E.44, N.47, L.48, V.51 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:E.44, A:N.47 Hydrogen bonds: A:E.19, A:E.44
K6N.8:	6 residues within 4Å: Chain C: E.19, C.43, E.44, N.47, L.48, V.51 4 PLIP interactions: 4 interactions with chain C Hydrophobic interactions: C:E.44, C:N.47 Hydrogen bonds: C:E.19, C:E.44

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Guillory, X. et al., Fragment-based Differential Targeting of PPI Stabilizer Interfaces. J.Med.Chem. (2020)

Release Date

2020-06-17

Peptides

14-3-3 protein sigma: AC
Cellular tumor antigen p53: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

B
P

D
P

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

14-3-3 protein sigma

Toggle Identical (AC)

Cellular tumor antigen p53

Toggle Identical (BD)

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