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SMTL ID : 6rws.1

Fragment AZ-009 binding at the p53pT387/14-3-3 sigma interface

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.53 Å

Oligo State

hetero-2-2-mer

Ligands

2 x KLZ: 4-chloranyl-6-(sulfanylmethyl)-1-benzothiophene-2-carboximidamide(Non-covalent)

KLZ.1:	6 residues within 4Å: Chain A: E.19, C.43, E.44, N.47, L.48, V.51 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:N.47 Hydrogen bonds: A:E.19
KLZ.3:	6 residues within 4Å: Chain C: E.19, C.43, E.44, N.47, L.48, V.51 2 PLIP interactions: 2 interactions with chain C Hydrophobic interactions: C:N.47 Hydrogen bonds: C:E.19

2 x MG: MAGNESIUM ION(Non-covalent)

MG.2:	2 residues within 4Å: Chain A: E.40, E.115 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.40, A:E.40, A:E.115, H₂O.7, H₂O.8
MG.4:	2 residues within 4Å: Chain C: E.40, E.115 5 PLIP interactions: 3 interactions with chain C, 2 Ligand-Water interactions Metal complexes: C:E.40, C:E.40, C:E.115, H₂O.18, H₂O.20

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Guillory, X. et al., Fragment-based Differential Targeting of PPI Stabilizer Interfaces. J.Med.Chem. (2020)

Release Date

2020-06-17

Peptides

14-3-3 protein sigma: AC
Cellular tumor antigen p53: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

B
P

D
P

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

14-3-3 protein sigma

Toggle Identical (AC)

Cellular tumor antigen p53

Toggle Identical (BD)

Related Entries With Identical Sequence

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