- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- hetero-2-2-mer
- Ligands
- 6 x UPK: 2-(hydroxymethyl)-5-(2-phenylimidazol-1-yl)phenol(Covalent)
UPK.1: 10 residues within 4Å:- Chain A: C.43, N.47, K.127, P.172, I.173, G.176, L.177, I.224
- Chain B: W.13
- Ligands: GOL.4
9 PLIP interactions:6 interactions with chain A, 3 interactions with chain B- Hydrophobic interactions: A:K.127, A:I.173, A:I.224, B:W.13
- Hydrogen bonds: A:K.127, A:G.176, A:L.177
- pi-Stacking: B:W.13, B:W.13
UPK.2: 4 residues within 4Å:- Chain A: K.200, R.229, T.233, T.236
4 PLIP interactions:4 interactions with chain A- Hydrophobic interactions: A:K.200
- Hydrogen bonds: A:K.200, A:K.200
- pi-Cation interactions: A:R.229
UPK.3: 6 residues within 4Å:- Chain A: M.3, M.6, K.14
- Chain C: E.88, Y.89, K.92
5 PLIP interactions:2 interactions with chain C, 3 interactions with chain A- Hydrophobic interactions: C:E.88, C:K.92, A:K.14
- Hydrogen bonds: A:K.14, A:K.14
UPK.9: 10 residues within 4Å:- Chain C: C.43, N.47, K.127, P.172, I.173, G.176, L.177, I.224
- Chain D: W.13
- Ligands: GOL.12
9 PLIP interactions:6 interactions with chain C, 3 interactions with chain D- Hydrophobic interactions: C:K.127, C:I.173, C:I.224, D:W.13
- Hydrogen bonds: C:K.127, C:G.176, C:L.177
- pi-Stacking: D:W.13, D:W.13
UPK.10: 4 residues within 4Å:- Chain C: K.200, R.229, T.233, T.236
4 PLIP interactions:4 interactions with chain C- Hydrophobic interactions: C:K.200
- Hydrogen bonds: C:K.200
- Water bridges: C:T.233
- pi-Cation interactions: C:R.229
UPK.11: 6 residues within 4Å:- Chain A: E.88, Y.89, K.92
- Chain C: M.3, M.6, K.14
4 PLIP interactions:2 interactions with chain C, 2 interactions with chain A- Hydrophobic interactions: C:K.14, A:E.88, A:K.92
- Hydrogen bonds: C:K.14
- 4 x GOL: GLYCEROL(Non-functional Binders)
GOL.4: 3 residues within 4Å:- Chain A: V.51
- Chain B: W.13
- Ligands: UPK.1
No protein-ligand interaction detected (PLIP)GOL.5: 7 residues within 4Å:- Chain A: F.203, M.207, L.210, Y.218, T.222, M.225, Q.226
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:Y.218, A:Y.218, A:T.222, A:Q.226
GOL.12: 3 residues within 4Å:- Chain C: V.51
- Chain D: W.13
- Ligands: UPK.9
No protein-ligand interaction detected (PLIP)GOL.13: 7 residues within 4Å:- Chain C: F.203, M.207, L.210, Y.218, T.222, M.225, Q.226
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:Y.218, C:T.222, C:Q.226
- 4 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
PEG.6: 5 residues within 4Å:- Chain A: R.90, E.94, T.95, Q.98, T.141
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:R.90, A:T.95, A:Q.98, A:T.141
- Water bridges: A:R.90, A:T.141
PEG.7: 4 residues within 4Å:- Chain A: D.109, S.110, H.111, K.114
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:D.109, A:S.110, A:K.114
- Water bridges: A:L.108, A:K.114
PEG.14: 5 residues within 4Å:- Chain C: R.90, E.94, T.95, Q.98, T.141
8 PLIP interactions:8 interactions with chain C- Hydrogen bonds: C:R.90, C:E.94, C:T.95, C:Q.98, C:T.141, C:T.141
- Water bridges: C:R.90, C:T.141
PEG.15: 4 residues within 4Å:- Chain C: D.109, S.110, H.111, K.114
4 PLIP interactions:4 interactions with chain C- Hydrogen bonds: C:S.110, C:K.114
- Water bridges: C:L.108, C:K.114
- 2 x MG: MAGNESIUM ION(Non-covalent)
MG.8: 2 residues within 4Å:- Chain A: E.40, E.115
5 PLIP interactions:3 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:E.40, A:E.40, A:E.115, H2O.2, H2O.9
MG.16: 2 residues within 4Å:- Chain C: E.40, E.115
5 PLIP interactions:3 interactions with chain C, 2 Ligand-Water interactions- Metal complexes: C:E.40, C:E.40, C:E.115, H2O.14, H2O.21
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Cossar, P.J. et al., Reversible Covalent Imine-Tethering for Selective Stabilization of 14-3-3 Hub Protein Interactions. J.Am.Chem.Soc. (2021)
- Release Date
- 2021-06-16
- Peptides
- 14-3-3 protein sigma: AC
Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1: BD - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AC
AB
PD
P
SMTL ID : 7nrl.1
14-3-3 sigma with Pin1 binding site pS72 and covalently bound LvD1032
14-3-3 protein sigma
Toggle Identical (AC)Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1
Toggle Identical (BD)Related Entries With Identical Sequence
3lw1.1 | 6qhl.1 | 6qhm.1 | 6qzr.1 | 6qzr.2 | 6qzr.3 | 6qzr.4 | 6qzs.1 | 6rjl.1 | 6rjq.1 | 6rjz.1 | 6rk8.1 | 6rki.1 | 6rkk.1 | 6rkm.1 | 6rl3.1 | 6rl4.1 | 6rl6.1 | 6rm5.1 | 6rm7.1 | 6rwh.1 | 6rwi.1 | 6rws.1 | 6rwu.1 | 6rx2.1 | 6s39.1 | 6s3c.1 | 6s40.1 | 6s9q.1 | 6slw.1 more...less...6slx.1 | 6y1j.1 | 6y3m.1 | 6y3o.1 | 6y3r.1 | 6y3s.1 | 6y3v.1 | 6y40.1 | 6y44.1 | 6y7t.1 | 6y7t.2 | 6y7t.3 | 6y8a.1 | 6y8b.1 | 6y8d.1 | 6y8e.1 | 6yox.1 | 6zvb.1 | 6zvc.1 | 6zvd.1 | 6zve.1 | 7aog.1 | 7axn.1 | 7ayf.1 | 7az1.1 | 7az2.1 | 7bdp.1 | 7bdt.1 | 7bdy.1 | 7bfw.1 | 7bg3.1 | 7bgq.1 | 7bgr.1 | 7bgv.1 | 7bgw.1 | 7bi3.1 | 7biq.1 | 7biw.1 | 7biy.1 | 7bjb.1 | 7bjf.1 | 7bjl.1 | 7bjw.1 | 7bkh.1 | 7bm9.1 | 7bmc.1 | 7nif.1 | 7nig.1 | 7nix.1 | 7nj6.1 | 7nj8.1 | 7nj9.1 | 7nja.1 | 7njb.1 | 7nk3.1 | 7nk5.1 | 7nla.1 | 7nle.1 | 7nm1.1 | 7nm3.1 | 7nm9.1 | 7nma.1 | 7nmh.1 | 7nmw.1 | 7nmx.1 | 7nn2.1 | 7nnd.1 | 7nne.1 | 7np2.1 | 7npb.1 | 7npg.1 | 7nqp.1 | 7nr7.1 | 7nrk.1 | 7nsv.1 | 7ob5.1 | 7ob8.1 | 7obc.1 | 7obd.1 | 7obg.1 | 7obh.1 | 7obk.1 | 7obl.1 | 7obs.1 | 7obt.1 | 7obx.1 | 7oby.1 | 7opw.1 | 7oq7.1 | 7oq8.1 | 7oq9.1 | 7oqa.1 | 7oqg.1 | 7oqj.1 | 7oqs.1 | 7oqu.1 | 7oqw.1 | 7or3.1 | 7or5.1 | 7or7.1 | 7or8.1 | 7org.1 | 7orh.1 | 7ors.1 | 7ort.1 | 8c2g.1 | 8c3c.1 | 8r0z.1