- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.90 Å
- Oligo State
- hetero-2-2-mer
- Ligands
- 8 x MG: MAGNESIUM ION(Non-covalent)
MG.1: 1 residues within 4Å:- Chain A: E.193
1 PLIP interactions:1 interactions with chain A- Metal complexes: A:E.193
MG.2: 1 residues within 4Å:- Chain A: E.94
3 PLIP interactions:1 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:E.94, H2O.2, H2O.4
MG.4: 1 residues within 4Å:- Chain A: E.7
2 PLIP interactions:1 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:E.7, H2O.2
MG.5: 4 residues within 4Å:- Chain A: G.1, A.2, M.3, E.36
No protein-ligand interaction detected (PLIP)MG.12: 1 residues within 4Å:- Chain C: E.193
1 PLIP interactions:1 interactions with chain C- Metal complexes: C:E.193
MG.13: 1 residues within 4Å:- Chain C: E.94
3 PLIP interactions:1 interactions with chain C, 2 Ligand-Water interactions- Metal complexes: C:E.94, H2O.10, H2O.12
MG.15: 1 residues within 4Å:- Chain C: E.7
2 PLIP interactions:1 interactions with chain C, 1 Ligand-Water interactions- Metal complexes: C:E.7, H2O.10
MG.16: 4 residues within 4Å:- Chain C: G.1, A.2, M.3, E.36
No protein-ligand interaction detected (PLIP)- 2 x CL: CHLORIDE ION(Non-functional Binders)
CL.3: 1 residues within 4Å:- Chain C: K.14
Ligand excluded by PLIPCL.14: 1 residues within 4Å:- Chain A: K.14
Ligand excluded by PLIP- 8 x KTW: 4-chloranyl-1-benzothiophene-2-carboximidamide(Non-covalent)
KTW.6: 6 residues within 4Å:- Chain A: E.19, E.44, N.47, L.48, V.51
- Ligands: KTW.8
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:E.19
KTW.7: 6 residues within 4Å:- Chain A: Q.98, D.102, L.105, G.106, Y.133, L.136
6 PLIP interactions:6 interactions with chain A- Hydrophobic interactions: A:D.102, A:L.105, A:L.136
- Hydrogen bonds: A:Q.98
- pi-Stacking: A:Y.133
- Halogen bonds: A:D.102
KTW.8: 2 residues within 4Å:- Chain A: E.19
- Ligands: KTW.6
No protein-ligand interaction detected (PLIP)KTW.9: 7 residues within 4Å:- Chain A: K.200, F.203, D.204, R.229, L.232, T.233, T.236
2 PLIP interactions:2 interactions with chain A- Hydrophobic interactions: A:R.229, A:L.232
KTW.17: 6 residues within 4Å:- Chain C: E.19, E.44, N.47, L.48, V.51
- Ligands: KTW.19
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:E.19
KTW.18: 6 residues within 4Å:- Chain C: Q.98, D.102, L.105, G.106, Y.133, L.136
6 PLIP interactions:6 interactions with chain C- Hydrophobic interactions: C:D.102, C:L.105, C:L.136
- Hydrogen bonds: C:Q.98
- pi-Stacking: C:Y.133
- Halogen bonds: C:D.102
KTW.19: 2 residues within 4Å:- Chain C: E.19
- Ligands: KTW.17
1 PLIP interactions:1 interactions with chain C- Water bridges: C:E.19
KTW.20: 7 residues within 4Å:- Chain C: K.200, F.203, D.204, R.229, L.232, T.233, T.236
2 PLIP interactions:2 interactions with chain C- Hydrophobic interactions: C:R.229, C:L.232
- 2 x GOL: GLYCEROL(Non-functional Binders)
GOL.10: 7 residues within 4Å:- Chain A: F.203, M.207, L.210, Y.218, T.222, M.225, Q.226
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:M.225
GOL.21: 7 residues within 4Å:- Chain C: F.203, M.207, L.210, Y.218, T.222, M.225, Q.226
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:M.225
- 2 x CA: CALCIUM ION(Non-covalent)
CA.11: 3 residues within 4Å:- Chain A: R.61, R.65, E.138
3 PLIP interactions:1 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:E.138, H2O.7, H2O.8
CA.22: 3 residues within 4Å:- Chain C: R.61, R.65, E.138
3 PLIP interactions:1 interactions with chain C, 2 Ligand-Water interactions- Metal complexes: C:E.138, H2O.16, H2O.17
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Guillory, X. et al., Fragment-based Differential Targeting of PPI Stabilizer Interfaces. J.Med.Chem. (2020)
- Release Date
- 2020-06-17
- Peptides
- 14-3-3 protein sigma: AC
p53pT387: BD - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AC
AB
PD
P
SMTL ID : 6s40.1
Fragment AZ-001 binding at the p53pT387/14-3-3 sigma interface and additional sites
14-3-3 protein sigma
Toggle Identical (AC)p53pT387
Toggle Identical (BD)Related Entries With Identical Sequence
3lw1.1 | 5mhc.1 | 5moc.1 | 6qhl.1 | 6qhm.1 | 6qzr.1 | 6qzr.2 | 6qzr.3 | 6qzr.4 | 6qzs.1 | 6r5l.1 | 6rjl.1 | 6rjq.1 | 6rjz.1 | 6rk8.1 | 6rki.1 | 6rkk.1 | 6rkm.1 | 6rl3.1 | 6rl4.1 | 6rl6.1 | 6rm5.1 | 6rm7.1 | 6rwh.1 | 6rwi.1 | 6rws.1 | 6rwu.1 | 6rx2.1 | 6s39.1 | 6s3c.1 more...less...6s9q.1 | 6sin.1 | 6sio.1 | 6sip.1 | 6siq.1 | 6slv.1 | 6slw.1 | 6slx.1 | 6y1j.1 | 6y3m.1 | 6y3o.1 | 6y3r.1 | 6y3s.1 | 6y3v.1 | 6y40.1 | 6y44.1 | 6y7t.1 | 6y7t.2 | 6y7t.3 | 6y8a.1 | 6y8b.1 | 6y8d.1 | 6y8e.1 | 6yox.1 | 6zvb.1 | 6zvc.1 | 6zvd.1 | 6zve.1 | 7aog.1 | 7axn.1 | 7bdy.1 | 7bfw.1 | 7bgq.1 | 7bgr.1 | 7bgv.1 | 7bgw.1 | 7bi3.1 | 7biq.1 | 7biw.1 | 7biy.1 | 7bjb.1 | 7bjf.1 | 7bjl.1 | 7bjw.1 | 7bkh.1 | 7bm9.1 | 7bmc.1 | 7nif.1 | 7nig.1 | 7nix.1 | 7nj6.1 | 7nj8.1 | 7nj9.1 | 7nja.1 | 7njb.1 | 7nk3.1 | 7nk5.1 | 7nla.1 | 7nle.1 | 7nm1.1 | 7nm3.1 | 7nm9.1 | 7nma.1 | 7nmh.1 | 7nmw.1 | 7nmx.1 | 7nn2.1 | 7nnd.1 | 7nne.1 | 7np2.1 | 7npb.1 | 7npg.1 | 7nqp.1 | 7nr7.1 | 7nrk.1 | 7nrl.1 | 7nsv.1 | 7ob5.1 | 7ob8.1 | 7obc.1 | 7obd.1 | 7obg.1 | 7obh.1 | 7obk.1 | 7obl.1 | 7obs.1 | 7obt.1 | 7obx.1 | 7oby.1 | 7opw.1 | 7oq7.1 | 7oq8.1 | 7oq9.1 | 7oqa.1 | 7oqg.1 | 7oqj.1 | 7oqs.1 | 7oqu.1 | 7oqw.1 | 7or3.1 | 7or5.1 | 7or7.1 | 7or8.1 | 7org.1 | 7orh.1 | 7ors.1 | 7ort.1 | 8r0z.1