SMTL ID : 7oqa.1

Ternary complex of 14-3-3 sigma, Pin1pS72 phosphopeptide, and WQ162

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

hetero-2-2-mer

Ligands

4 x 09W: ~{N}-[(5-carbamimidoyl-3-phenyl-thiophen-2-yl)methyl]-2,3-dihydro-1-benzofuran-7-carboxamide(Non-covalent)

09W.1: 7 residues within 4Å: Chain A: I.196, K.200, F.203, R.229, L.232, T.233, T.236 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:K.200, A:R.229, A:L.232, A:L.232 Water bridges: A:K.200, A:T.236 09W.2: 10 residues within 4Å: Chain A: E.19, C.43, E.44, N.47, L.48, V.51, P.172, D.220, I.224 Chain B: W.13 9 PLIP interactions: 8 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:E.44, A:E.44, A:P.172, A:D.220, B:W.13 Hydrogen bonds: A:E.19, A:E.19, A:N.47, A:N.47 09W.4: 7 residues within 4Å: Chain C: I.196, K.200, F.203, R.229, L.232, T.233, T.236 6 PLIP interactions: 6 interactions with chain C Hydrophobic interactions: C:K.200, C:R.229, C:L.232, C:L.232 Water bridges: C:K.200, C:T.236 09W.5: 10 residues within 4Å: Chain C: E.19, C.43, E.44, N.47, L.48, V.51, P.172, D.220, I.224 Chain D: W.13 9 PLIP interactions: 8 interactions with chain C, 1 interactions with chain D Hydrophobic interactions: C:E.44, C:E.44, C:P.172, C:D.220, D:W.13 Hydrogen bonds: C:E.19, C:E.19, C:N.47, C:N.47

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 6 residues within 4Å: Chain A: M.6, K.14, F.30 Chain C: E.88, Y.89, K.92 Ligand excluded by PLIP CL.6: 6 residues within 4Å: Chain A: E.88, Y.89, K.92 Chain C: M.6, K.14, F.30 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Centorrino, F. et al., A crystallography-based study of fragment extensions into the 14-3-3 binding groove. To Be Published

Release Date

2022-08-10

Peptides

14-3-3 protein sigma: AC
Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

B
P

D
P

14-3-3 protein sigma

Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1

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