6s9q.1 | SWISS-MODEL Template Library

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SMTL ID : 6s9q.1

Fragment AZ-004 binding at a primary and secondary site in a p53pT387/14-3-3 complex

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.69 Å

Oligo State

hetero-2-2-mer

Ligands

6 x L1T: 4-methyl-5-phenyl-thiophene-2-carboximidamide(Non-covalent)

L1T.1:	8 residues within 4Å: Chain A: E.19, M.27, C.43, E.44, N.47, L.48, V.51 Ligands: L1T.2 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:E.44, A:E.44, A:N.47 Hydrogen bonds: A:E.19, A:E.19
L1T.2:	2 residues within 4Å: Chain A: E.19 Ligands: L1T.1 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.19 Water bridges: A:E.19
L1T.3:	7 residues within 4Å: Chain A: Q.98, D.102, L.105, G.106, Y.133, L.136, I.148 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:Q.98, A:Y.133, A:L.136 Hydrogen bonds: A:D.102, A:D.102, A:Y.133
L1T.5:	8 residues within 4Å: Chain C: E.19, M.27, C.43, E.44, N.47, L.48, V.51 Ligands: L1T.6 5 PLIP interactions: 5 interactions with chain C Hydrophobic interactions: C:E.44, C:E.44, C:N.47 Hydrogen bonds: C:E.19, C:E.19
L1T.6:	2 residues within 4Å: Chain C: E.19 Ligands: L1T.5 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:E.19 Water bridges: C:E.19, C:E.19
L1T.7:	7 residues within 4Å: Chain C: Q.98, D.102, L.105, G.106, Y.133, L.136, I.148 5 PLIP interactions: 5 interactions with chain C Hydrophobic interactions: C:Q.98, C:Y.133, C:L.136 Hydrogen bonds: C:D.102, C:Y.133

2 x CA: CALCIUM ION(Non-covalent)

CA.4:	6 residues within 4Å: Chain A: E.88, Y.89, K.92 Chain C: M.6, K.14, F.30 No protein-ligand interaction detected (PLIP)
CA.8:	6 residues within 4Å: Chain A: M.6, K.14, F.30 Chain C: E.88, Y.89, K.92 No protein-ligand interaction detected (PLIP)

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Guillory, X. et al., Fragment-based Differential Targeting of PPI Stabilizer Interfaces. J.Med.Chem. (2020)

Release Date

2020-06-17

Peptides

14-3-3 protein sigma: AC
Cellular tumor antigen p53: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

B
P

D
P

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

14-3-3 protein sigma

Toggle Identical (AC)

Cellular tumor antigen p53

Toggle Identical (BD)

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