6rwi.1 | SWISS-MODEL Template Library

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SMTL ID : 6rwi.1

Fragment AZ-002 binding at the p53pT387/14-3-3 sigma interface

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.65 Å

Oligo State

hetero-2-2-mer

Ligands

2 x KLE: 5-phenylthiophene-2-carboximidamide(Non-covalent)

KLE.1:	6 residues within 4Å: Chain A: E.19, C.43, E.44, N.47, L.48, V.51 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:E.44, A:E.44, A:N.47 Hydrogen bonds: A:E.19
KLE.5:	6 residues within 4Å: Chain C: E.19, C.43, E.44, N.47, L.48, V.51 4 PLIP interactions: 4 interactions with chain C Hydrophobic interactions: C:E.44, C:E.44, C:N.47 Hydrogen bonds: C:E.19

2 x CA: CALCIUM ION(Non-covalent)

CA.2:	3 residues within 4Å: Chain A: Y.89, K.92 Chain C: K.14 No protein-ligand interaction detected (PLIP)
CA.6:	3 residues within 4Å: Chain A: K.14 Chain C: Y.89, K.92 No protein-ligand interaction detected (PLIP)

4 x MG: MAGNESIUM ION(Non-covalent)

MG.3:	1 residues within 4Å: Chain A: E.94 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:E.94, H₂O.2, H₂O.8, H₂O.8
MG.4:	2 residues within 4Å: Chain B: D.10, D.12 6 PLIP interactions: 2 interactions with chain B, 4 Ligand-Water interactions Metal complexes: B:D.10, B:D.12, H₂O.12, H₂O.13, H₂O.13, H₂O.13
MG.7:	1 residues within 4Å: Chain C: E.94 4 PLIP interactions: 1 interactions with chain C, 3 Ligand-Water interactions Metal complexes: C:E.94, H₂O.14, H₂O.20, H₂O.21
MG.8:	2 residues within 4Å: Chain D: D.10, D.12 6 PLIP interactions: 2 interactions with chain D, 4 Ligand-Water interactions Metal complexes: D:D.10, D:D.12, H₂O.25, H₂O.25, H₂O.25, H₂O.25

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Guillory, X. et al., Fragment-based Differential Targeting of PPI Stabilizer Interfaces. J.Med.Chem. (2020)

Release Date

2020-06-17

Peptides

14-3-3 protein sigma: AC
Cellular tumor antigen p53: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

B
P

D
P

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

14-3-3 protein sigma

Toggle Identical (AC)

Cellular tumor antigen p53

Toggle Identical (BD)

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