SMTL ID : 6udj.1

HIV-1 bNAb 1-18 in complex with BG505 SOSIP.664 and 10-1074

Coordinates
PDB Format
Method
ELECTRON MICROSCOPY
Oligo State
hetero-3-3-3-3-3-3-mer
Ligands
3 x NAG- NAG- BMA- MAN- MAN- MAN- MAN- MAN- MAN: alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
18 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
6 x NAG- NAG- BMA- MAN- MAN: alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
6 x NAG- NAG- BMA- MAN: alpha-D-mannopyranose-(1-6)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
3 x NAG- NAG- BMA- MAN- MAN- MAN: alpha-D-mannopyranose-(1-3)-alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
9 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
15 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
Links
RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP
Citation
Schommers, P. et al., Restriction of HIV-1 Escape by a Highly Broad and Potent Neutralizing Antibody. Cell (2020)
Release Date
2020-01-29
Peptides
10-1074 Fab Heavy Chain: ABC
1-18 Fab Light Chain: DEF
10-1074 Fab Light Chain: GIK
1-18 Fab Heavy Chain: HJL
Envelope glycoprotein gp41: MOQ
Envelope glycoprotein gp120: NPR
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
K
C
Q
D
E
E
O
F
I
G
B
I
L
K
R
H
D
J
N
L
H
M
C
O
M
Q
F
N
G
P
J
R
P

10-1074 Fab Heavy Chain

Toggle Identical (ABC)

1-18 Fab Light Chain

Toggle Identical (DEF)

10-1074 Fab Light Chain

Toggle Identical (GIK)

1-18 Fab Heavy Chain

Toggle Identical (HJL)

Envelope glycoprotein gp41

Toggle Identical (MOQ)

Envelope glycoprotein gp120

Toggle Identical (NPR)

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