SMTL ID : 6ujo.1

HHAT L75F Neoantigen Peptide KQWLVWLFL Presented by HLA-A206

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.25 Å

Oligo State

hetero-1-1-mer

Ligands

1 x LYS- GLN- TRP- LEU- VAL- TRP- LEU- PHE- LEU: Protein-cysteine N-palmitoyltransferase HHAT(Non-covalent)

LYS-GLN-TRP-LEU-VAL-TRP-LEU-PHE-LEU.1: 30 residues within 4Å: Chain A: M.6, Y.8, Y.10, M.46, E.64, K.67, V.68, A.70, H.71, Q.73, T.74, V.77, D.78, T.81, L.82, Y.85, R.98, Y.100, H.115, Y.117, Y.124, T.144, K.147, W.148, V.153, L.157, Y.160, T.164, W.168, Y.172 36 PLIP interactions: 36 interactions with chain A Hydrophobic interactions: A:Y.8, A:K.67, A:K.67, A:A.70, A:T.74, A:V.77, A:V.77, A:D.78, A:L.82, A:Y.117, A:Y.124, A:T.144, A:W.148, A:V.153, A:L.157, A:L.157, A:Y.160, A:Y.160, A:T.164, A:W.168, A:W.168 Hydrogen bonds: A:E.64, A:E.64, A:K.67, A:V.68, A:D.78, A:Y.85, A:Y.100, A:Y.100, A:K.147, A:Y.172 Water bridges: A:K.67, A:T.74, A:R.98, A:Y.117 Salt bridges: A:K.147

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Devlin, J.R. et al., Structural dissimilarity from self drives neoepitope escape from immune tolerance. Nat.Chem.Biol. (2020)

Release Date

2020-08-19

Peptides

MHC class I antigen: A
Beta-2-microglobulin: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

MHC class I antigen

Beta-2-microglobulin

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