SMTL ID : 7lfz.1

Human leukocyte antigen B*07:02 in complex with SARS-CoV2 epitope IPRRNVATL

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

hetero-1-1-mer

Ligands

1 x ILE- PRO- ARG- ARG- ASN- VAL- ALA- THR- LEU: ORF1ab(Non-covalent)

ILE-PRO-ARG-ARG-ASN-VAL-ALA-THR-LEU.1: 27 residues within 4Å: Chain A: M.5, Y.7, Y.9, Y.59, R.62, N.63, I.66, Y.67, Q.70, T.73, E.76, S.77, N.80, Y.84, L.95, Y.99, D.114, Y.116, Y.123, T.143, K.146, W.147, E.152, R.156, Y.159, W.167, Y.171 42 PLIP interactions: 42 interactions with chain A Hydrophobic interactions: A:Y.59, A:N.63, A:Y.67, A:T.73, A:E.76, A:L.95, A:Y.99, A:Y.116, A:Y.123, A:W.147, A:E.152, A:Y.159, A:W.167, A:W.167 Hydrogen bonds: A:Y.7, A:R.62, A:R.62, A:R.62, A:S.77, A:N.80, A:Y.84, A:Y.99, A:Y.99, A:Y.116, A:Y.116, A:Y.116, A:K.146, A:K.146, A:R.156, A:R.156, A:Y.171, A:Y.171 Water bridges: A:Q.70, A:Q.70, A:Q.70, A:T.73, A:T.73, A:K.146, A:W.147 Salt bridges: A:D.114, A:K.146 pi-Cation interactions: A:Y.99

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Patskovska, L. et al., Human leukocyte antigen B*07:02 in complex with SARS-CoV2 epitope IPRRNVATL. To Be Published

Release Date

2021-02-03

Peptides

HLA class I histocompatibility antigen, B-7 alpha chain: A
Beta-2-microglobulin: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

HLA class I histocompatibility antigen, B-7 alpha chain

Beta-2-microglobulin

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