SMTL ID : 7mja.1

HLA-A*24:02 bound to Neuroblastoma derived PHOX2B peptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.69 Å

Oligo State

hetero-1-1-mer

Ligands

1 x GLN- TYR- ASN- PRO- ILE- ARG- THR- THR- PHE: Paired mesoderm homeobox protein 2B peptide(Non-covalent)

GLN-TYR-ASN-PRO-ILE-ARG-THR-THR-PHE.1: 36 residues within 4Å: Chain A: M.8, Y.10, S.12, F.25, A.27, M.48, Y.62, E.66, K.69, V.70, A.72, H.73, T.76, E.79, N.80, I.83, A.84, Y.87, L.98, M.100, F.102, H.117, Y.119, Y.126, T.146, K.149, W.150, V.155, Q.159, Y.162, T.166, C.167, D.169, G.170, R.173, Y.174 34 PLIP interactions: 34 interactions with chain A Hydrophobic interactions: A:V.70, A:H.73, A:N.80, A:I.83, A:L.98, A:F.102, A:Y.126, A:Y.126, A:W.150, A:V.155, A:Y.162, A:T.166 Hydrogen bonds: A:Y.10, A:E.66, A:K.69, A:T.76, A:N.80, A:N.80, A:Y.87, A:T.146, A:K.149, A:W.150, A:Q.159, A:Y.162, A:T.166, A:R.173, A:R.173, A:Y.174, A:Y.174 Water bridges: A:H.73, A:Q.159 pi-Stacking: A:Y.10, A:F.102, A:Y.119

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 8 residues within 4Å: Chain A: T.34, W.54, T.181, L.182, D.186, Y.212, G.242, T.243 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.34, A:T.181 Water bridges: A:T.181

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yarmarkovich, M. et al., Cross-HLA targeting of intracellular oncoproteins with peptide-centric CARs. Nature (2021)

Release Date

2021-08-18

Peptides

HLA class I histocompatibility antigen: A
Beta-2-microglobulin: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

HLA class I histocompatibility antigen

Beta-2-microglobulin

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