SMTL ID : 7rtd.1

SARS-CoV-2 Spike-derived peptide S269-277 (YLQPRTFLL) presented by HLA-A*02:01

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.05 Å

Oligo State

hetero-1-1-mer

Ligands

1 x TYR- LEU- GLN- PRO- ARG- THR- PHE- LEU- LEU: Spike protein S1(Non-covalent)

TYR-LEU-GLN-PRO-ARG-THR-PHE-LEU-LEU.1: 28 residues within 4Å: Chain A: M.29, Y.31, F.33, M.69, E.87, K.90, V.91, H.94, T.97, V.100, D.101, T.104, L.105, Y.108, Y.123, H.138, Y.140, Y.147, T.167, K.170, W.171, V.176, Q.179, L.180, Y.183, T.187, W.191, Y.195 39 PLIP interactions: 39 interactions with chain A Hydrophobic interactions: A:Y.31, A:F.33, A:V.91, A:T.97, A:V.100, A:D.101, A:L.105, A:Y.123, A:Y.140, A:Y.147, A:T.167, A:W.171, A:V.176, A:V.176, A:Q.179, A:Y.183, A:T.187, A:W.191, A:W.191 Hydrogen bonds: A:E.87, A:K.90, A:T.97, A:D.101, A:Y.108, A:Y.123, A:Y.123, A:H.138, A:Y.140, A:T.167, A:Q.179, A:Q.179, A:Y.183, A:Y.195 Water bridges: A:D.101, A:R.121, A:R.121 Salt bridges: A:K.170 pi-Stacking: A:W.191 pi-Cation interactions: A:K.90

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Szeto, C. et al., Molecular Basis of a Dominant SARS-CoV-2 Spike-Derived Epitope Presented by HLA-A*02:01 Recognised by a Public TCR. Cells (2021)

Release Date

2021-10-13

Peptides

HLA class I antigen: A
Beta-2-microglobulin: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

HLA class I antigen

Beta-2-microglobulin

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