SMTL ID : 7wjk.1

Complex structure of AtHPPD-ZWJ

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-dimer

Ligands

2 x CO: COBALT (II) ION(Non-covalent)

CO.1: 4 residues within 4Å: Chain A: H.198, H.280, E.366 Ligands: 0I7.2 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.198, A:H.280, A:E.366, H2O.1 CO.3: 4 residues within 4Å: Chain B: H.198, H.280, E.366 Ligands: 0I7.4 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.198, B:H.280, B:E.366, H2O.7

2 x 0I7: 3-[2-[4-[[4-[2,2-bis(fluoranyl)-4,6,10,12-tetramethyl-1,3-diaza-2$l^{4}-boratricyclo[7.3.0.0^{3,7}]dodeca-4,6,9,11-tetraen-8-yl]phenoxy]methyl]-1,2,3-triazol-1-yl]ethyl]-1,5-dimethyl-6-[(1S)-2-oxidanyl-6-oxidanylidene-cyclohex-2-en-1-yl]carbonyl-quinazoline-2,4-dione(Non-covalent)

0I7.2: 20 residues within 4Å: Chain A: H.198, V.200, S.239, P.252, N.254, Q.279, H.280, M.307, P.308, Q.351, F.353, F.364, E.366, F.391, G.392, N.395, F.396, L.399, I.403 Ligands: CO.1 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:P.252, A:P.308, A:F.353, A:F.353, A:F.364, A:F.391, A:F.396, A:L.399, A:I.403 Water bridges: A:Q.351 pi-Stacking: A:F.396 0I7.4: 20 residues within 4Å: Chain B: H.198, V.200, S.239, P.252, N.254, Q.279, H.280, M.307, P.308, Q.351, F.353, F.364, E.366, F.391, G.392, N.395, F.396, L.399, I.403 Ligands: CO.3 11 PLIP interactions: 11 interactions with chain B Hydrophobic interactions: B:P.252, B:P.308, B:F.353, B:F.353, B:F.364, B:F.391, B:F.396, B:L.399, B:I.403 Water bridges: B:Q.351 pi-Stacking: B:F.396

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yang, G.-F. et al., Complex structure of AtHPPD-PyQ1. To Be Published

Release Date

2023-01-25

Peptides

4-hydroxyphenylpyruvate dioxygenase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

4-hydroxyphenylpyruvate dioxygenase

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