SMTL ID : 7x5w.1

Crystal structure of AtHPPD-Y18022 complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

homo-dimer

Ligands

2 x CO: COBALT (II) ION(Non-covalent)

CO.1: 4 residues within 4Å: Chain A: H.198, H.280, E.366 Ligands: 9US.2 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.198, A:H.280, A:E.366, H2O.3 CO.3: 4 residues within 4Å: Chain B: H.198, H.280, E.366 Ligands: 9US.4 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.198, B:H.280, B:E.366, H2O.14

2 x 9US: 1,5-dimethyl-3-naphthalen-1-yl-6-(2-oxidanyl-6-oxidanylidene-cyclohexen-1-yl)carbonyl-quinazoline-2,4-dione(Non-covalent)

9US.2: 20 residues within 4Å: Chain A: H.198, V.200, L.237, S.239, P.252, N.254, R.262, Q.265, H.280, M.307, F.353, F.364, E.366, F.391, G.392, K.393, N.395, F.396, L.399 Ligands: CO.1 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:P.252, A:Q.265, A:Q.265, A:F.353, A:F.364, A:F.391, A:K.393, A:F.396, A:F.396, A:F.396 Water bridges: A:Q.279, A:Q.351 pi-Stacking: A:F.353 9US.4: 20 residues within 4Å: Chain B: H.198, V.200, L.237, S.239, P.252, N.254, R.262, Q.265, H.280, M.307, F.353, F.364, E.366, F.391, G.392, K.393, N.395, F.396, L.399 Ligands: CO.3 13 PLIP interactions: 13 interactions with chain B Hydrophobic interactions: B:P.252, B:Q.265, B:Q.265, B:F.353, B:F.364, B:F.391, B:K.393, B:F.396, B:F.396, B:F.396 Water bridges: B:Q.279, B:Q.351 pi-Stacking: B:F.353

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dong, J. et al., Structural insights of 4-Hydrophenylpyruvate dioxygenase inhibition by structurally diverse small molecules. Adv Agrochem (2022)

Release Date

2022-06-01

Peptides

4-hydroxyphenylpyruvate dioxygenase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

4-hydroxyphenylpyruvate dioxygenase

Related Entries With Identical Sequence