SMTL ID : 8whp.1

Crystal structure of AtHPPD-YH201042 complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.92 Å

Oligo State

homo-dimer

Ligands

2 x CO: COBALT (II) ION

CO.1: 4 residues within 4Å: Chain A: H.198, H.280, E.366 Ligands: WI0.2 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.198, A:H.280, A:E.366, H2O.1 CO.3: 4 residues within 4Å: Chain B: H.198, H.280, E.366 Ligands: WI0.4 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.198, B:H.280, B:E.366, H2O.8

2 x WI0: 6-(1,3-dimethyl-5-oxidanyl-pyrazol-4-yl)carbonyl-3-(2-ethoxyethyl)-5-methyl-2-(trifluoromethyl)quinazolin-4-one

WI0.2: 16 residues within 4Å: Chain A: H.198, V.200, V.241, P.252, H.280, M.307, Q.351, F.353, F.364, E.366, F.391, G.392, N.395, F.396, L.399 Ligands: CO.1 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:F.353, A:F.353, A:F.353, A:F.364, A:F.364, A:F.396 Hydrogen bonds: A:S.239 Water bridges: A:Q.265, A:Q.351 pi-Stacking: A:F.396 Halogen bonds: A:N.395 WI0.4: 16 residues within 4Å: Chain B: H.198, V.200, V.241, P.252, H.280, M.307, Q.351, F.353, F.364, E.366, F.391, G.392, N.395, F.396, L.399 Ligands: CO.3 11 PLIP interactions: 11 interactions with chain B Hydrophobic interactions: B:F.353, B:F.353, B:F.353, B:F.364, B:F.364, B:F.396 Hydrogen bonds: B:S.239 Water bridges: B:Q.265, B:Q.351 pi-Stacking: B:F.396 Halogen bonds: B:N.395

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yang, G.-F. et al., Crystal structure of AtHPPD-YH201042 complex. To Be Published

Release Date

2024-09-25

Peptides

4-hydroxyphenylpyruvate dioxygenase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

4-hydroxyphenylpyruvate dioxygenase

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