SMTL ID : 8h6b.1

Crystal structure of AtHPPD complexed with YH20702

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-dimer

Ligands

2 x CO: COBALT (II) ION(Non-covalent)

CO.1: 4 residues within 4Å: Chain A: H.198, H.280, E.366 Ligands: N1K.2 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.198, A:H.280, A:E.366, H2O.1 CO.3: 4 residues within 4Å: Chain B: H.198, H.280, E.366 Ligands: N1K.4 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.198, B:H.280, B:E.366, H2O.6

2 x N1K: N-(1-methyl-1,2,3,4-tetrazol-5-yl)-1-pentyl-pyrrolo[2,3-b]pyridine-4-carboxamide(Non-covalent)

N1K.2: 14 residues within 4Å: Chain A: H.198, V.200, S.239, P.252, N.254, H.280, F.353, F.364, E.366, F.391, G.392, F.396, L.399 Ligands: CO.1 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:F.353, A:F.353, A:F.364, A:F.396, A:L.399 Water bridges: A:Q.351 N1K.4: 14 residues within 4Å: Chain B: H.198, V.200, S.239, P.252, N.254, H.280, F.353, F.364, E.366, F.391, G.392, F.396, L.399 Ligands: CO.3 6 PLIP interactions: 6 interactions with chain B Hydrophobic interactions: B:F.353, B:F.353, B:F.364, B:F.396, B:L.399 Water bridges: B:Q.351

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yang, G.-F., Crystal structure of AtHPPD complexed with YH20702. To Be Published

Release Date

2023-10-18

Peptides

4-hydroxyphenylpyruvate dioxygenase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

4-hydroxyphenylpyruvate dioxygenase

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