SMTL ID : 8i2p.1

Crystal structure of AtHPPD-Y19060 complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-dimer

Ligands

2 x CO: COBALT (II) ION(Non-covalent)

CO.1: 4 residues within 4Å: Chain A: H.198, H.280, E.366 Ligands: OAY.2 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.198, A:H.280, A:E.366, H2O.1 CO.3: 4 residues within 4Å: Chain B: H.198, H.280, E.366 Ligands: OAY.4 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.198, B:H.280, B:E.366, H2O.4

2 x OAY: 3-(cyclopropylmethyl)-6-[(5-cyclopropyl-2-methyl-3-oxidanylidene-1H-pyrazol-4-yl)carbonyl]-1,5-dimethyl-quinazoline-2,4-dione(Non-covalent)

OAY.2: 17 residues within 4Å: Chain A: H.198, V.200, L.237, V.241, P.252, Q.265, H.280, Q.351, F.353, F.364, E.366, F.391, G.392, N.395, F.396, L.399 Ligands: CO.1 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:L.237, A:F.353, A:F.353, A:F.364, A:F.391, A:F.396, A:F.396, A:F.396 Hydrogen bonds: A:S.239, A:S.239 Water bridges: A:Q.265, A:Q.351 OAY.4: 17 residues within 4Å: Chain B: H.198, V.200, L.237, V.241, P.252, Q.265, H.280, Q.351, F.353, F.364, E.366, F.391, G.392, N.395, F.396, L.399 Ligands: CO.3 12 PLIP interactions: 12 interactions with chain B Hydrophobic interactions: B:L.237, B:F.353, B:F.353, B:F.364, B:F.391, B:F.396, B:F.396, B:F.396 Hydrogen bonds: B:S.239, B:S.239 Water bridges: B:Q.265, B:Q.351

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dong, J. et al., Crystal structure of AtHPPD-Y19060 complex. To Be Published

Release Date

2023-12-20

Peptides

4-hydroxyphenylpyruvate dioxygenase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

4-hydroxyphenylpyruvate dioxygenase

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