SMTL ID : 8wpc.1

Complex structure of AtHPPD with LB553

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-dimer

Ligands

2 x CO: COBALT (II) ION(Non-covalent)

CO.1: 4 residues within 4Å: Chain A: H.198, H.280, E.366 Ligands: X2T.2 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.198, A:H.280, A:E.366, H2O.2 CO.3: 4 residues within 4Å: Chain B: H.198, H.280, E.366 Ligands: X2T.4 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.198, B:H.280, B:E.366, H2O.10

2 x X2T: (2R)-3-[2,4-bis(chloranyl)-3-methyl-phenyl]carbonyl-1-cyclopropyl-2-methyl-4-oxidanyl-2H-pyrrol-5-one(Non-covalent)

X2T.2: 15 residues within 4Å: Chain A: H.198, V.200, S.239, P.252, H.280, Q.351, F.353, F.364, E.366, F.391, G.392, K.393, F.396, L.399 Ligands: CO.1 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:F.353, A:K.393, A:F.396, A:F.396 Water bridges: A:Q.351 X2T.4: 15 residues within 4Å: Chain B: H.198, V.200, S.239, P.252, H.280, Q.351, F.353, F.364, E.366, F.391, G.392, K.393, F.396, L.399 Ligands: CO.3 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:F.353, B:K.393, B:F.396, B:F.396 Water bridges: B:Q.351

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yang, G.-F. et al., Complex structure of AtHPPD with LB553. To Be Published

Release Date

2024-10-09

Peptides

4-hydroxyphenylpyruvate dioxygenase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

4-hydroxyphenylpyruvate dioxygenase

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