SMTL ID : 8i15.1

Crystal structure of AtHPPD-YH20335 complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.19 Å

Oligo State

homo-dimer

Ligands

2 x CO: COBALT (II) ION(Non-covalent)

CO.1: 4 residues within 4Å: Chain A: H.198, H.280, E.366 Ligands: O7C.2 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.198, A:H.280, A:E.366, H2O.1 CO.3: 4 residues within 4Å: Chain B: H.198, H.280, E.366 Ligands: O7C.4 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.198, B:H.280, B:E.366, H2O.5

2 x O7C: 1,4-dimethyl-5-(2-oxidanyl-6-oxidanylidene-cyclohexen-1-yl)carbonyl-3-(phenylmethyl)benzimidazol-2-one(Non-covalent)

O7C.2: 17 residues within 4Å: Chain A: H.198, L.237, S.239, P.252, Q.265, I.266, Q.279, H.280, Q.351, F.353, F.364, E.366, F.391, G.392, F.396, L.399 Ligands: CO.1 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:L.237, A:P.252, A:Q.265, A:I.266, A:F.353, A:F.391, A:F.396 Water bridges: A:N.254, A:Q.351 pi-Stacking: A:F.353, A:F.353 O7C.4: 17 residues within 4Å: Chain B: H.198, L.237, S.239, P.252, Q.265, I.266, Q.279, H.280, Q.351, F.353, F.364, E.366, F.391, G.392, F.396, L.399 Ligands: CO.3 11 PLIP interactions: 11 interactions with chain B Hydrophobic interactions: B:L.237, B:P.252, B:Q.265, B:I.266, B:F.353, B:F.391, B:F.396 Water bridges: B:N.254, B:Q.351 pi-Stacking: B:F.353, B:F.353

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dong, J. et al., Crystal structure of AtHPPD-YH20335 complex. To Be Published

Release Date

2023-12-20

Peptides

4-hydroxyphenylpyruvate dioxygenase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

4-hydroxyphenylpyruvate dioxygenase

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