SMTL ID : 8j8x.1

Crystal structure of AtHPPD-YH20307 complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

homo-dimer

Ligands

2 x CO: COBALT (II) ION(Non-covalent)

CO.1: 4 residues within 4Å: Chain A: H.198, H.280, E.366 Ligands: U7O.2 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.198, A:H.280, A:E.366, H2O.2 CO.3: 4 residues within 4Å: Chain B: H.198, H.280, E.366 Ligands: U7O.4 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.198, B:H.280, B:E.366, H2O.11

2 x U7O: 5-(1,3-dimethyl-5-oxidanyl-pyrazol-4-yl)carbonyl-1,4-dimethyl-3-propan-2-yl-benzimidazol-2-one

U7O.2: 16 residues within 4Å: Chain A: H.198, V.200, P.252, Q.265, H.280, Q.351, F.353, F.364, E.366, F.391, G.392, K.393, N.395, F.396, L.399 Ligands: CO.1 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:F.353, A:F.353, A:F.364, A:K.393, A:F.396 Hydrogen bonds: A:K.393 Water bridges: A:Q.351 pi-Stacking: A:F.396 U7O.4: 16 residues within 4Å: Chain B: H.198, V.200, P.252, Q.265, H.280, Q.351, F.353, F.364, E.366, F.391, G.392, K.393, N.395, F.396, L.399 Ligands: CO.3 8 PLIP interactions: 8 interactions with chain B Hydrophobic interactions: B:F.353, B:F.353, B:F.364, B:K.393, B:F.396 Hydrogen bonds: B:K.393 Water bridges: B:Q.351 pi-Stacking: B:F.396

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lin, H.-Y. et al., Crystal structure of AtHPPD-YH20307 complex. To Be Published

Release Date

2024-05-08

Peptides

4-hydroxyphenylpyruvate dioxygenase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

4-hydroxyphenylpyruvate dioxygenase

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