SMTL ID : 8hzu.1

Crystal structure of AtHPPD-XHD complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-dimer

Ligands

2 x CO: COBALT (II) ION(Non-covalent)

CO.1: 4 residues within 4Å: Chain A: H.198, H.280, E.366 Ligands: T9O.2 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.198, A:H.280, A:E.366, H2O.3 CO.3: 4 residues within 4Å: Chain B: H.198, H.280, E.366 Ligands: T9O.4 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.198, B:H.280, B:E.366, H2O.11

2 x T9O: (5R)-2-butanimidoyl-5-[(2R)-2-ethylsulfanylpropyl]-3-oxidanyl-cyclohex-2-en-1-one(Non-covalent)

T9O.2: 15 residues within 4Å: Chain A: H.198, V.200, S.239, P.252, N.254, H.280, L.340, Q.351, F.353, E.366, F.391, G.392, K.393, F.396 Ligands: CO.1 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:V.200, A:L.340, A:F.353, A:F.353, A:F.391, A:F.396, A:F.396 Water bridges: A:Q.351 T9O.4: 15 residues within 4Å: Chain B: H.198, V.200, S.239, P.252, N.254, H.280, L.340, Q.351, F.353, E.366, F.391, G.392, K.393, F.396 Ligands: CO.3 8 PLIP interactions: 8 interactions with chain B Hydrophobic interactions: B:V.200, B:L.340, B:F.353, B:F.353, B:F.391, B:F.396, B:F.396 Water bridges: B:Q.351

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dong, J. et al., Crystal structure of AtHPPD-XHD complex. To Be Published

Release Date

2023-12-20

Peptides

4-hydroxyphenylpyruvate dioxygenase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

4-hydroxyphenylpyruvate dioxygenase

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