SMTL ID : 7x8d.1

Crystal structure of AtHPPD-phenylpyruvate complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-dimer

Ligands

2 x CO: COBALT (II) ION(Non-covalent)

CO.1: 4 residues within 4Å: Chain A: H.198, H.280, E.366 Ligands: PPY.2 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.198, A:H.280, A:E.366, H2O.2 CO.3: 4 residues within 4Å: Chain B: H.198, H.280, E.366 Ligands: PPY.4 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.198, B:H.280, B:E.366, H2O.9

2 x PPY: 3-PHENYLPYRUVIC ACID(Non-covalent)

PPY.2: 9 residues within 4Å: Chain A: V.200, L.237, S.239, P.252, N.254, Q.279, H.280, F.391 Ligands: CO.1 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:V.200, A:L.237 Hydrogen bonds: A:S.239 PPY.4: 9 residues within 4Å: Chain B: V.200, L.237, S.239, P.252, N.254, Q.279, H.280, F.391 Ligands: CO.3 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:V.200, B:L.237 Hydrogen bonds: B:S.239

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dong, J. et al., Structural insights of 4-Hydrophenylpyruvate dioxygenase inhibition by structurally diverse small molecules. Adv Agrochem (2022)

Release Date

2022-06-01

Peptides

4-hydroxyphenylpyruvate dioxygenase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

4-hydroxyphenylpyruvate dioxygenase

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