SMTL ID : 7xpx.1

Cryo-EM structure of the histone methyltransferase SET8 bound to H4K20Ecx-nucleosome

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-2-2-2-1-mer

Ligands

1 x SAM: S-ADENOSYLMETHIONINE(Non-covalent)

SAM.1: 14 residues within 4Å: Chain K: G.94, K.95, G.96, R.97, C.139, Y.140, R.164, L.165, I.166, N.167, H.168, Y.205, H.216, W.218 7 PLIP interactions: 7 interactions with chain K Hydrophobic interactions: K:Y.140 Hydrogen bonds: K:R.97, K:H.168, K:H.168 Salt bridges: K:R.97 pi-Cation interactions: K:H.216, K:H.216

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shi, L. et al., Structural basis of nucleosomal H4K20 methylation by methyltransferase SET8. Faseb J. (2022)

Release Date

2022-06-01

Peptides

Histone H3: AE
Histone H4: BF
Histone H2A: CG
Histone H2B 1.1: DH
N-lysine methyltransferase KMT5A: K

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

E
E

B
B

F
F

C
C

G
G

D
D

H
H

K
K

Histone H3

Histone H4

Histone H2A

Histone H2B 1.1

N-lysine methyltransferase KMT5A

Related Entries With Identical Sequence