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SMTL ID : 9liu.1

Structure of isw1-nucleosome double-bound complex in ATP-ATP state

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-2-2-2-2-mer

Ligands

2 x MG: MAGNESIUM ION(Non-covalent)

MG.1:	3 residues within 4Å: Chain K: T.160, N.191 Ligands: ATP.2 No protein-ligand interaction detected (PLIP)
MG.3:	4 residues within 4Å: Chain L: N.191, G.516, N.518 Ligands: ATP.4 No protein-ligand interaction detected (PLIP)

2 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.2:

17 residues within 4Å:

Chain K: Q.127, R.129, Q.132, G.156, L.157, G.158, K.159, T.160, L.161, D.256, E.257, G.516, N.518, R.543, R.546, I.547
Ligands: MG.1

16 PLIP interactions:

16 interactions with chain K

Hydrogen bonds: K:Q.127, K:R.129, K:Q.132, K:G.156, K:L.157, K:K.159, K:T.160, K:E.257, K:E.257, K:R.543
Salt bridges: K:K.159, K:K.159, K:R.546, K:R.546, K:R.546
pi-Cation interactions: K:R.129

ATP.4:

16 residues within 4Å:

Chain L: Q.127, R.129, G.156, L.157, G.158, K.159, T.160, L.161, W.199, E.257, G.516, N.518, R.543, R.546, I.547
Ligands: MG.3

18 PLIP interactions:

18 interactions with chain L

Hydrogen bonds: L:Q.127, L:R.129, L:Q.132, L:G.156, L:L.157, L:L.157, L:K.159, L:T.160, L:E.257, L:G.516, L:N.518
Salt bridges: L:K.159, L:K.159, L:R.543, L:R.546, L:R.546, L:R.546
pi-Cation interactions: L:R.129

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Sia, Y. et al., Structural insights into chromatin remodeling by ISWI during active ATP hydrolysis. Science (2025)

Release Date

2025-04-09

Peptides

Histone H3: AE
Histone H4: BF
Histone H2A: CG
Histone H2B: DH
ISWI chromatin-remodeling complex ATPase ISW1: KL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

E
E

B
B

F
F

C
C

G
G

D
D

H
H

K
K

L
N

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Histone H3

Histone H4

Histone H2A

Toggle Identical (CG)

Histone H2B

Toggle Identical (DH)

ISWI chromatin-remodeling complex ATPase ISW1

Toggle Identical (KL)

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