SMTL ID : 8qaz.1

Crystal Structure of BRPF1 bromodomain in complex with acetyl-pyrrole derivative compound 3

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.40 Å

Oligo State

monomer

Ligands

1 x QA5: 2-[4-[4-ethanoyl-5-methyl-3-(3-methylbutyl)-1~{H}-pyrrol-2-yl]-1,3-thiazol-2-yl]guanidine(Non-covalent)

QA5.1: 12 residues within 4Å: Chain A: I.28, F.29, E.31, V.33, P.34, E.37, V.38, Y.41, C.80, Y.83, N.84, F.90 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:F.29, A:V.33, A:V.33, A:V.38, A:Y.83, A:F.90, A:F.90 Hydrogen bonds: A:I.28, A:N.84 Salt bridges: A:E.37 pi-Stacking: A:F.90

1 x NO3: NITRATE ION(Non-functional Binders)

NO3.2: 5 residues within 4Å: Chain A: L.81, K.86, Y.91, V.95, R.98 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Y.91, A:Y.91, A:R.98, A:R.98

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cazzanelli, G. et al., Enhanced cellular death in liver and breast cancer cells by dual BET/BRPF1 inhibitors. Protein Sci. (2024)

Release Date

2024-09-11

Peptides

Peregrin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Peregrin

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