SMTL ID : 8sgm.1

Crystal Structure of CD1d-lipid complexed with Beta-2-Microglobulin, TCR Alpha-Chain and TCR Beta-Chain

Coordinates
PDB Format
Method
X-RAY DIFFRACTION 2.50 Å
Oligo State
hetero-1-1-1-1-mer
Ligands
1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
1 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
1 x GOL: GLYCEROL(Non-functional Binders)
1 x 01: N-[(2S)-3-oxo-1-(beta-L-talopyranosyloxy)octadecan-2-yl]docosanamide
2 x SO4: SULFATE ION(Non-functional Binders)
Links
RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP
Citation
Chan Yew Poa, K.T.O. et al., Semi-invariant human type II Natural Killer T cells recognise CD1d independently of bound lipids. To Be Published
Release Date
2024-04-24
Peptides
Antigen-presenting glycoprotein CD1d: A
Beta-2-microglobulin: B
Natural killer T cell receptor TRAV26-2: C
Natural killer T cell receptor TRBV19 beta chain: D
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
B
C
C
D
D

Antigen-presenting glycoprotein CD1d

Beta-2-microglobulin

Natural killer T cell receptor TRAV26-2

Natural killer T cell receptor TRBV19 beta chain

Related Entries With Identical Sequence

1a9b.1 | 1a9b.2 | 1a9e.1 | 1b0g.1 | 1b0g.2 | 1b0r.1 | 1bd2.1 | 1cg9.1 | 1duy.1 | 1duy.2 | 1duz.1 | 1duz.2 | 1eey.1 | 1eey.2 | 1eez.1 | 1eez.2 | 1efx.1 | 1gzp.1 | 1gzq.1 | 1hhg.1 | 1hhg.2 | 1hhh.1 | 1hhi.1 | 1hhi.2 | 1hhj.1 | 1hhj.2 | 1hhk.1 | 1hhk.2 | 1i1f.1 | 1i1f.2  more...