- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 3.07 Å
- Oligo State
- hetero-1-1-1-mer
- Ligands
- 1 x FE: FE (III) ION(Non-covalent)
- 2 x BPH: BACTERIOPHEOPHYTIN A(Non-covalent)
- 4 x BCL: BACTERIOCHLOROPHYLL A(Non-covalent)
BCL.3: 17 residues within 4Å:- Chain B: I.46, Y.128, L.131, F.146, I.150, H.153, L.154
- Chain C: F.196, G.202, I.205, A.206, X.209, G.210, L.213
- Ligands: BPH.4, BCL.6, BCL.8
10 PLIP interactions:4 interactions with chain C, 6 interactions with chain B,- Hydrophobic interactions: C:F.196, C:I.205, C:I.205, C:L.213, B:I.46, B:Y.128, B:L.131, B:F.146, B:L.154
- Metal complexes: B:H.153
BCL.6: 28 residues within 4Å:- Chain B: F.97, A.124, I.125, A.127, Y.128, L.131, W.156, V.157, S.158, T.160, G.161, Y.162, N.166, F.167, H.168, H.173, A.176, I.177, F.180, S.244, A.245, C.247, M.248
- Chain C: X.209
- Ligands: BCL.3, BPH.4, BCL.8, BCL.13
12 PLIP interactions:12 interactions with chain B,- Hydrophobic interactions: B:F.97, B:F.97, B:F.97, B:A.127, B:V.157, B:Y.162, B:F.167, B:A.176, B:I.177, B:F.180
- Hydrogen bonds: B:S.244
- Metal complexes: B:H.173
BCL.8: 26 residues within 4Å:- Chain B: V.157, Y.162, F.181
- Chain C: M.121, V.125, A.152, L.155, W.156, L.159, T.185, N.186, F.188, S.189, L.195, F.196, H.201, S.204, I.205, X.209, V.275, G.279, I.283
- Ligands: BPH.2, BCL.3, BCL.6, BCL.13
12 PLIP interactions:1 interactions with chain B, 11 interactions with chain C,- Hydrophobic interactions: B:V.157, C:V.125, C:A.152, C:L.155, C:W.156, C:T.185, C:F.188, C:L.195, C:F.196, C:I.205, C:V.275
- Metal complexes: C:H.201
BCL.13: 20 residues within 4Å:- Chain B: H.168, M.174, I.177, S.178, F.181, T.182, L.185
- Chain C: M.121, W.156, L.159, V.174, I.178, H.181, L.182, W.184, T.185
- Ligands: BPH.2, BCL.6, BCL.8, SPO.11
8 PLIP interactions:6 interactions with chain C, 2 interactions with chain B,- Hydrophobic interactions: C:L.159, C:V.174, C:I.178, C:L.182, C:W.184, B:I.177, B:L.185
- Metal complexes: C:H.181
- 1 x U10: UBIQUINONE-10(Non-covalent)
- 1 x CL: CHLORIDE ION(Non-functional Binders)
- 2 x LDA: LAURYL DIMETHYLAMINE-N-OXIDE(Non-covalent)
LDA.9: 4 residues within 4Å:- Chain C: F.6, L.37, W.40
- Ligands: U10.5
4 PLIP interactions:4 interactions with chain C- Hydrophobic interactions: C:F.6, C:W.40
- pi-Cation interactions: C:W.40, C:W.40
LDA.10: 7 residues within 4Å:- Chain B: V.220, Y.222
- Chain C: S.29, G.30, G.32, L.46
- Ligands: U10.5
2 PLIP interactions:1 interactions with chain C, 1 interactions with chain B- Hydrophobic interactions: C:L.46, B:Y.222
- 1 x SPO: SPHEROIDENE(Non-covalent)
SPO.11: 24 residues within 4Å:- Chain C: F.66, F.67, I.69, G.70, F.73, W.74, F.84, F.104, W.114, S.118, F.119, M.121, F.122, W.156, M.157, G.160, F.161, W.170, V.174, Y.176, G.177, I.178, H.181
- Ligands: BCL.13
19 PLIP interactions:19 interactions with chain C- Hydrophobic interactions: C:F.66, C:F.66, C:F.67, C:I.69, C:F.73, C:F.84, C:F.104, C:W.114, C:F.119, C:F.122, C:W.156, C:F.161, C:F.161, C:F.161, C:W.170, C:V.174, C:Y.176, C:I.178, C:H.181
- 1 x CDL: CARDIOLIPIN(Non-covalent)
CDL.12: 15 residues within 4Å:- Chain A: A.6, F.10, F.13, G.16, Y.20
- Chain B: N.199, P.200
- Chain C: G.142, K.143, H.144, W.147, W.154, R.266, I.269, W.270
17 PLIP interactions:1 interactions with chain B, 11 interactions with chain C, 5 interactions with chain A- Hydrogen bonds: B:N.199, C:K.143
- Hydrophobic interactions: C:W.147, C:W.147, C:W.147, C:W.154, C:W.154, C:W.270, A:F.10, A:F.13, A:F.13, A:Y.20, A:Y.20
- Salt bridges: C:H.144, C:H.144, C:H.144, C:R.266
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Tran, K. et al., Crystal structure of R.sphaeroides Photosynthetic Reaction Center variant Y(M210)2-chlorophenylalanine. To Be Published
- Release Date
- 2024-03-13
- Peptides
- Reaction center protein H chain: A
Reaction center protein L chain: B
Reaction center protein M chain: C - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
HB
LC
M - Membrane
-
We predict this structure to be a membrane protein.
SMTL ID : 8vtk.1
Crystal structure of R.sphaeroides Photosynthetic Reaction Center variant Y(M210)2-chlorophenylalanine
Reaction center protein H chain
Reaction center protein L chain
Reaction center protein M chain
Related Entries With Identical Sequence
1aig.1 | 1aig.2 | 1aij.1 | 1aij.2 | 1ds8.1 | 1ds8.2 | 1dv3.1 | 1dv3.2 | 1dv6.1 | 1dv6.2 | 1e14.1 | 1e6d.1 | 1jgw.1 | 1jgx.1 | 1jgy.1 | 1jgz.1 | 1k6l.1 | 1kby.1 | 1l9b.1 | 1l9j.1 | 1l9j.2 | 1m3x.1 | 1mps.1 | 1ogv.1 | 1pcr.1 | 1qov.1 | 1rg5.1 | 1rgn.1 | 1rqk.1 | 1umx.1 more...less...1z9k.1 | 1z9k.2 | 2bnp.1 | 2bns.1 | 2boz.1 | 2gnu.1 | 2hg3.1 | 2hg9.1 | 2hh1.1 | 2hhk.1 | 2hit.1 | 2hj6.1 | 2j8c.1 | 2j8d.1 | 2jiy.1 | 2jj0.1 | 2rcr.1 | 2uws.1 | 2uwt.1 | 2uwu.1 | 2uwv.1 | 2uww.1 | 2ux3.1 | 2ux4.1 | 2ux5.1 | 2uxj.1 | 2uxk.1 | 2uxl.1 | 2uxm.1 | 3i4d.1 | 4h99.1 | 4h9l.1 | 4hbh.1 | 4hbj.1 | 4in6.1 | 4n7k.1 | 4n7l.1 | 4rcr.1 | 4tqq.1 | 5v33.1 | 7pil.1 | 7pqd.30 | 7pqd.65 | 8vtj.1 | 8vtl.1 | 8vtm.1 | 8vtn.1 | 8vto.1