- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.55 Å
- Oligo State
- hetero-1-1-1-mer
- Ligands
- 4 x PO4: PHOSPHATE ION(Non-functional Binders)
- 4 x BCL: BACTERIOCHLOROPHYLL A(Non-covalent)
BCL.2: 29 residues within 4Å:- Chain A: F.97, A.124, I.125, A.127, Y.128, L.131, W.156, V.157, S.158, T.160, G.161, Y.162, N.166, F.167, H.168, H.173, A.176, I.177, F.180, S.244, A.245, C.247, M.248
- Chain B: Y.210
- Ligands: BCL.3, BPH.4, BCL.13, BCL.14, U10.16
14 PLIP interactions:13 interactions with chain A, 1 interactions with chain B,- Hydrophobic interactions: A:F.97, A:F.97, A:A.124, A:A.127, A:T.160, A:Y.162, A:F.167, A:A.176, A:I.177, A:F.180, A:F.180, B:Y.210
- Hydrogen bonds: A:S.244
- Metal complexes: A:H.173
BCL.3: 20 residues within 4Å:- Chain A: Y.128, L.131, F.146, I.150, H.153, L.154, V.157
- Chain B: F.197, G.203, I.206, A.207, Y.210, G.211, L.214
- Ligands: BCL.2, BPH.4, LDA.7, BCL.14, U10.16, PC7.22
10 PLIP interactions:5 interactions with chain B, 5 interactions with chain A,- Hydrophobic interactions: B:F.197, B:I.206, B:I.206, B:L.214, A:Y.128, A:L.131, A:F.146, A:L.154
- pi-Stacking: B:Y.210
- Metal complexes: A:H.153
BCL.13: 18 residues within 4Å:- Chain A: H.168, M.174, I.177, S.178, F.181, T.182
- Chain B: M.122, W.157, I.179, H.182, L.183, T.186
- Ligands: BCL.2, U10.5, PC9.6, BCL.14, BPH.15, LDA.19
7 PLIP interactions:4 interactions with chain A, 3 interactions with chain B,- Hydrophobic interactions: A:I.177, A:I.177, B:I.179, B:L.183
- Hydrogen bonds: A:S.178
- pi-Stacking: A:F.181
- Metal complexes: B:H.182
BCL.14: 31 residues within 4Å:- Chain A: V.157, Y.162, H.168, F.181
- Chain B: W.66, M.122, V.126, A.153, L.156, W.157, L.160, T.186, N.187, F.189, S.190, L.196, F.197, H.202, S.205, I.206, L.209, Y.210, V.276, T.277, G.280, I.284
- Ligands: BCL.2, BCL.3, PC9.6, BCL.13, BPH.15
13 PLIP interactions:13 interactions with chain B,- Hydrophobic interactions: B:W.66, B:V.126, B:L.156, B:W.157, B:T.186, B:F.189, B:L.196, B:I.206, B:L.209, B:Y.210, B:V.276, B:I.284
- Metal complexes: B:H.202
- 2 x BPH: BACTERIOPHEOPHYTIN A(Non-covalent)
BPH.4: 33 residues within 4Å:- Chain A: T.38, F.41, A.42, G.45, I.49, C.92, A.93, A.96, F.97, W.100, E.104, I.117, A.120, F.121, F.123, A.124, Y.128, Y.148, G.149, I.150, H.153, L.238, V.241
- Chain B: Y.210, A.213, L.214, M.218, W.252, T.255, M.256
- Ligands: BCL.2, BCL.3, U10.16
17 PLIP interactions:3 interactions with chain B, 14 interactions with chain A- Hydrophobic interactions: B:Y.210, B:A.213, B:L.214, A:I.49, A:A.96, A:A.120, A:F.121, A:F.121, A:F.123, A:Y.128, A:Y.148, A:Y.148, A:L.238, A:V.241, A:V.241
- Hydrogen bonds: A:E.104
- pi-Stacking: A:F.121
BPH.15: 24 residues within 4Å:- Chain A: F.181, A.184, L.185, A.188, L.189, F.216, L.219, V.220
- Chain B: S.59, L.60, G.63, L.64, A.125, V.126, W.129, T.133, T.146, A.149, F.150, A.153, T.277
- Ligands: PC9.6, BCL.13, BCL.14
13 PLIP interactions:10 interactions with chain B, 3 interactions with chain A- Hydrophobic interactions: B:L.64, B:A.125, B:W.129, B:W.129, B:A.149, B:F.150, B:F.150, B:A.153, B:T.277, A:A.184, A:A.188, A:L.189
- pi-Stacking: B:F.150
- 2 x U10: UBIQUINONE-10(Non-covalent)
U10.5: 21 residues within 4Å:- Chain A: I.175, S.178, F.179, T.182, L.189, H.190, L.193, V.194, E.212, D.213, F.216, Y.222, S.223, I.224, G.225, T.226, I.229, L.232
- Chain B: F.90
- Ligands: PC9.6, BCL.13
12 PLIP interactions:11 interactions with chain A, 1 interactions with chain B- Hydrophobic interactions: A:I.175, A:I.175, A:F.179, A:T.182, A:L.189, A:L.193, A:I.224, A:I.229, A:L.232, B:F.90
- Hydrogen bonds: A:I.224, A:G.225
U10.16: 26 residues within 4Å:- Chain A: F.29, G.35, W.100, R.103
- Chain B: L.214, M.218, H.219, T.222, I.223, A.245, A.248, A.249, W.252, M.256, F.258, N.259, A.260, T.261, I.265, W.268, M.272
- Ligands: BCL.2, BCL.3, BPH.4, LDA.7, LDA.23
17 PLIP interactions:13 interactions with chain B, 4 interactions with chain A- Hydrophobic interactions: B:L.214, B:M.218, B:W.252, B:M.256, B:F.258, B:F.258, B:A.260, B:I.265, B:W.268, B:W.268, A:F.29, A:F.29, A:W.100, A:W.100
- Hydrogen bonds: B:H.219, B:H.219, B:A.260
- 1 x PC9: (7R,14S)-14,15-DIBROMO-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSAN-1-AMINIUM 4-OXIDE(Non-covalent)
PC9.6: 17 residues within 4Å:- Chain A: L.185, L.189, F.216, V.220, G.221
- Chain B: R.29, S.30, G.31, G.33, L.47, G.48, I.50, W.129
- Ligands: U10.5, BCL.13, BCL.14, BPH.15
9 PLIP interactions:5 interactions with chain A, 4 interactions with chain B- Hydrophobic interactions: A:L.185, A:L.189, A:F.216, A:V.220, A:V.220, B:I.50, B:W.129, B:W.129
- Hydrogen bonds: B:G.31
- 8 x LDA: LAURYL DIMETHYLAMINE-N-OXIDE(Non-covalent)
LDA.7: 6 residues within 4Å:- Chain A: P.28, F.29
- Chain B: M.256, G.257
- Ligands: BCL.3, U10.16
1 PLIP interactions:1 interactions with chain B- Water bridges: B:G.257
LDA.8: 3 residues within 4Å:- Chain A: A.78, Q.87, W.142
2 PLIP interactions:2 interactions with chain A- Hydrophobic interactions: A:W.142, A:W.142
LDA.18: 5 residues within 4Å:- Chain B: F.7, S.8, L.38, W.41, F.42
6 PLIP interactions:6 interactions with chain B- Hydrophobic interactions: B:L.38, B:W.41, B:F.42, B:F.42
- Hydrogen bonds: B:S.8
- pi-Cation interactions: B:W.41
LDA.19: 5 residues within 4Å:- Chain B: P.176, Y.177, G.178, I.179
- Ligands: BCL.13
3 PLIP interactions:3 interactions with chain B- Hydrophobic interactions: B:Y.177, B:Y.177, B:I.179
LDA.23: 9 residues within 4Å:- Chain B: R.253, F.258, W.268
- Chain C: Q.32, Y.40, Q.53, F.56
- Ligands: U10.16, PC7.22
6 PLIP interactions:1 interactions with chain C, 5 interactions with chain B- Hydrophobic interactions: C:F.56, B:F.258, B:F.258, B:W.268
- Hydrogen bonds: B:R.253, B:R.253
LDA.24: 4 residues within 4Å:- Chain C: A.25, Y.29
- Ligands: LDA.25, LDA.26
1 PLIP interactions:1 interactions with chain C- Hydrophobic interactions: C:A.25
LDA.25: 4 residues within 4Å:- Chain C: Y.29, P.55, F.56
- Ligands: LDA.24
2 PLIP interactions:2 interactions with chain C- Hydrophobic interactions: C:Y.29, C:P.55
LDA.26: 6 residues within 4Å:- Chain C: Y.18, W.21, A.25, I.28
- Ligands: PC7.22, LDA.24
2 PLIP interactions:2 interactions with chain C- Hydrophobic interactions: C:W.21, C:A.25
- 1 x FE: FE (III) ION(Non-covalent)
- 1 x CDL: CARDIOLIPIN(Non-covalent)
CDL.17: 19 residues within 4Å:- Chain A: N.199, P.200
- Chain B: G.143, K.144, H.145, W.148, W.155, R.267, I.270, W.271, L.278, I.282
- Chain C: A.16, S.19, I.22, F.23, G.26, L.27, Y.30
25 PLIP interactions:7 interactions with chain C, 2 interactions with chain A, 16 interactions with chain B- Hydrophobic interactions: C:I.22, C:F.23, C:F.23, C:F.23, C:Y.30, C:Y.30, B:W.148, B:W.148, B:W.155, B:W.155, B:W.155, B:I.270, B:W.271, B:L.278, B:I.282
- Water bridges: C:Y.30, B:K.144, B:R.267
- Hydrogen bonds: A:N.199, A:N.199, B:K.144
- Salt bridges: B:H.145, B:H.145, B:H.145, B:R.267
- 1 x K: POTASSIUM ION(Non-covalent)
- 1 x HTO: HEPTANE-1,2,3-TRIOL(Non-covalent)
- 1 x PC7: (7S)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSAN-1-AMINIUM 4-OXIDE(Non-covalent)
PC7.22: 13 residues within 4Å:- Chain A: P.61, Q.62, Y.148
- Chain B: A.207, F.208, W.268, W.271, M.272
- Chain C: W.21, L.31
- Ligands: BCL.3, LDA.23, LDA.26
7 PLIP interactions:5 interactions with chain B, 1 interactions with chain C, 1 interactions with chain A- Hydrophobic interactions: B:A.207, B:F.208, B:W.268, B:W.268, B:W.271, C:L.31, A:Y.148
- 3 x GOL: GLYCEROL(Non-functional Binders)
GOL.27: 5 residues within 4Å:- Chain A: A.198, N.199, P.200
- Chain C: T.63, F.64
3 PLIP interactions:1 interactions with chain A, 2 interactions with chain C- Water bridges: A:N.199, C:T.63, C:T.63
GOL.28: 11 residues within 4Å:- Chain B: S.227, R.228, F.229, G.230, R.233
- Chain C: R.177, F.178, P.192, Q.194, E.230, C.234
6 PLIP interactions:3 interactions with chain C, 3 interactions with chain B- Hydrogen bonds: C:R.177, C:R.177, C:Q.194, B:R.228, B:G.230, B:R.233
GOL.29: 3 residues within 4Å:- Chain C: H.128, N.129, K.132
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:N.129, C:N.129
- Water bridges: C:N.129
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Roszak, A.W. et al., Brominated Lipids Identify Lipid Binding Sites on the Surface of the Reaction Center from Rhodobacter sphaeroides. Biochemistry (2007)
- Release Date
- 2007-03-27
- Peptides
- Reaction center protein L chain: A
Reaction center protein M chain: B
Reaction center protein H chain: C - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
LB
MC
H - Membrane
-
We predict this structure to be a membrane protein.
SMTL ID : 2hh1.1
Reaction centre from Rhodobacter sphaeroides strain R-26.1 complexed with dibrominated phosphatidylcholine
Reaction center protein L chain
Reaction center protein M chain
Reaction center protein H chain
Related Entries With Identical Sequence
1aig.1 | 1aig.2 | 1aij.1 | 1aij.2 | 1ds8.1 | 1ds8.2 | 1dv3.1 | 1dv3.2 | 1dv6.1 | 1dv6.2 | 1e14.1 | 1e6d.1 | 1f6n.1 | 1fnp.1 | 1fnq.1 | 1jgw.1 | 1jgx.1 | 1jgy.1 | 1jgz.1 | 1jh0.1 | 1k6l.1 | 1k6n.1 | 1kby.1 | 1l9b.1 | 1l9j.1 | 1l9j.2 | 1m3x.1 | 1mps.1 | 1ogv.1 | 1pcr.1 more...less...1qov.1 | 1rg5.1 | 1rgn.1 | 1rqk.1 | 1ry5.1 | 1rzh.1 | 1rzz.1 | 1rzz.2 | 1s00.1 | 1s00.2 | 1umx.1 | 1yf6.1 | 1yst.1 | 1z9j.1 | 1z9k.1 | 1z9k.2 | 2bnp.1 | 2bns.1 | 2boz.1 | 2gmr.1 | 2gnu.1 | 2hg3.1 | 2hg9.1 | 2hhk.1 | 2hit.1 | 2hj6.1 | 2j8c.1 | 2j8d.1 | 2jiy.1 | 2jj0.1 | 2rcr.1 | 2uws.1 | 2uwt.1 | 2uwu.1 | 2uwv.1 | 2uww.1 | 2ux3.1 | 2ux4.1 | 2ux5.1 | 2uxj.1 | 2uxk.1 | 2uxl.1 | 2uxm.1 | 2wx5.1 | 3dsy.1 | 3dta.1 | 3dtr.1 | 3dts.1 | 3du2.1 | 3du3.1 | 3duq.1 | 3i4d.1 | 3zum.1 | 3zuw.1 | 4h99.1 | 4h9l.1 | 4hbh.1 | 4hbj.1 | 4in6.1 | 4lwy.1 | 4n7k.1 | 4n7l.1 | 4rcr.1 | 4tqq.1 | 4v9g.30 | 4v9g.62 | 5lri.1 | 5lse.1 | 7pil.1 | 7pqd.30 | 7pqd.31 | 7pqd.65 | 7pqd.66 | 7va9.3 | 7va9.35 | 7vb9.1 | 7vnm.1 | 7vny.1 | 7vor.3 | 7vor.36 | 7vot.3 | 7vot.36 | 7voy.1