- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 3.00 Å
- Oligo State
- hetero-1-1-1-mer
- Ligands
- 4 x BCL: BACTERIOCHLOROPHYLL A(Non-covalent)
- 2 x BPH: BACTERIOPHEOPHYTIN A(Non-covalent)
BPH.3: 30 residues within 4Å:- Chain A: F.41, A.42, G.45, I.49, A.93, A.96, F.97, W.100, E.104, I.117, A.120, F.121, F.123, A.124, Y.128, Y.148, G.149, I.150, H.153, L.238, V.241
- Chain B: Y.210, A.213, L.214, M.218, W.252, M.256
- Ligands: BCL.1, BCL.2, U10.11
19 PLIP interactions:3 interactions with chain B, 16 interactions with chain A- Hydrophobic interactions: B:Y.210, B:A.213, B:L.214, A:A.42, A:I.49, A:A.96, A:A.120, A:F.121, A:F.121, A:F.121, A:F.123, A:A.124, A:Y.128, A:Y.148, A:Y.148, A:L.238, A:V.241, A:V.241
- Hydrogen bonds: A:E.104
BPH.10: 26 residues within 4Å:- Chain A: F.181, A.184, L.185, A.188, L.189, F.216, L.219, V.220
- Chain B: S.59, L.60, G.63, L.64, A.125, V.126, W.129, T.133, T.146, A.149, F.150, A.153, A.273, V.274, T.277
- Ligands: BCL.8, BCL.9, PS2.14
13 PLIP interactions:4 interactions with chain A, 9 interactions with chain B- Hydrophobic interactions: A:A.184, A:L.185, A:A.188, A:L.189, B:L.60, B:L.64, B:A.125, B:W.129, B:A.149, B:F.150, B:F.150, B:F.150, B:F.150
- 2 x U10: UBIQUINONE-10(Non-covalent)
U10.4: 20 residues within 4Å:- Chain A: S.178, F.179, T.182, L.189, H.190, L.193, E.212, D.213, F.216, Y.222, S.223, I.224, G.225, T.226, I.229, L.232, W.263
- Chain B: F.90
- Ligands: BCL.8, PS2.14
13 PLIP interactions:12 interactions with chain A, 1 interactions with chain B- Hydrophobic interactions: A:F.179, A:T.182, A:L.189, A:L.193, A:F.216, A:I.224, A:I.229, A:I.229, A:L.232, A:W.263, B:F.90
- Hydrogen bonds: A:I.224, A:G.225
U10.11: 26 residues within 4Å:- Chain A: F.29, Y.30, G.35, T.38, W.100, R.103
- Chain B: M.218, H.219, T.222, A.248, A.249, W.252, M.256, F.258, N.259, A.260, T.261, M.262, I.265, W.268, M.272
- Ligands: BCL.1, BCL.2, BPH.3, LDA.15, LDA.22
13 PLIP interactions:9 interactions with chain B, 4 interactions with chain A- Hydrophobic interactions: B:M.218, B:W.252, B:M.256, B:F.258, B:I.265, B:W.268, B:W.268, B:W.268, A:F.29, A:T.38, A:W.100, A:W.100
- Hydrogen bonds: B:A.260
- 1 x FE: FE (III) ION(Non-covalent)
- 2 x PO4: PHOSPHATE ION(Non-functional Binders)
PO4.6: 4 residues within 4Å:- Chain B: N.25, N.28, G.53, S.54
6 PLIP interactions:6 interactions with chain B- Hydrogen bonds: B:N.25, B:S.54, B:S.54, B:S.54, B:S.54
- Water bridges: B:L.55
PO4.7: 2 residues within 4Å:- Chain B: Y.134, Q.138
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:Y.134, B:Q.138
- 1 x HTO: HEPTANE-1,2,3-TRIOL(Non-covalent)
- 1 x CDL: CARDIOLIPIN(Non-covalent)
CDL.13: 17 residues within 4Å:- Chain A: N.199, P.200
- Chain B: G.143, K.144, H.145, W.148, W.155, R.267, I.270, W.271, L.278
- Chain C: A.16, I.22, F.23, G.26, L.27, Y.30
22 PLIP interactions:16 interactions with chain B, 2 interactions with chain A, 4 interactions with chain C- Hydrophobic interactions: B:W.148, B:W.148, B:W.148, B:W.148, B:W.155, B:W.155, B:I.270, B:W.271, B:L.278, C:I.22, C:F.23, C:F.23
- Hydrogen bonds: B:K.144, A:N.199, A:N.199
- Water bridges: B:K.144, B:R.267, C:Y.30
- Salt bridges: B:H.145, B:H.145, B:H.145, B:R.267
- 1 x PS2: O-[{[(2R)-2-{[(9S,10S)-9,10-DIBROMOOCTADECANOYL]OXY}-3-(PALMITOYLOXY)PROPYL]OXY}(HYDROXY)PHOSPHORYL]-L-SERINE(Non-covalent)
PS2.14: 13 residues within 4Å:- Chain A: L.185, V.220, G.221
- Chain B: A.27, R.29, S.30, G.31, L.47, G.48, W.129
- Ligands: U10.4, BCL.8, BPH.10
6 PLIP interactions:2 interactions with chain A, 4 interactions with chain B- Hydrophobic interactions: A:L.185, A:V.220, B:W.129, B:W.129
- Hydrogen bonds: B:N.28, B:G.31
- 8 x LDA: LAURYL DIMETHYLAMINE-N-OXIDE(Non-covalent)
LDA.15: 9 residues within 4Å:- Chain B: R.253, F.258
- Chain C: Q.32, Y.40, Q.53, F.56
- Ligands: U10.11, LDA.16, LDA.22
8 PLIP interactions:5 interactions with chain B, 3 interactions with chain C- Hydrophobic interactions: B:F.258, B:F.258, B:F.258, C:Q.32, C:F.56
- Hydrogen bonds: B:R.253, B:R.253
- Water bridges: C:Q.32
LDA.16: 8 residues within 4Å:- Chain B: P.200, F.208, W.268, M.272
- Chain C: W.21
- Ligands: BCL.2, LDA.15, LDA.24
4 PLIP interactions:3 interactions with chain B, 1 interactions with chain C- Hydrophobic interactions: B:F.208, B:W.268, C:W.21
- Water bridges: B:G.203
LDA.17: 6 residues within 4Å:- Chain A: A.101, V.105, Y.115, F.119
- Chain B: Q.4
- Ligands: GOL.20
5 PLIP interactions:4 interactions with chain A, 1 interactions with chain B- Hydrophobic interactions: A:A.101, A:V.105, A:Y.115, A:F.119
- Hydrogen bonds: B:Q.4
LDA.18: 4 residues within 4Å:- Chain B: F.7, L.38, W.41, F.42
4 PLIP interactions:4 interactions with chain B- Hydrophobic interactions: B:L.38, B:W.41, B:F.42
- pi-Cation interactions: B:W.41
LDA.19: 11 residues within 4Å:- Chain B: I.70, F.74, W.115, W.157, G.161, A.174, V.175, G.178, I.179
- Ligands: BCL.8, BCL.9
3 PLIP interactions:3 interactions with chain B- Hydrophobic interactions: B:W.115, B:A.174, B:I.179
LDA.22: 7 residues within 4Å:- Chain A: F.29
- Chain B: M.256, G.257
- Chain C: N.52, Q.53
- Ligands: U10.11, LDA.15
2 PLIP interactions:1 interactions with chain A, 1 interactions with chain C- Hydrophobic interactions: A:F.29
- Hydrogen bonds: C:N.52
LDA.23: 1 residues within 4Å:- Chain C: A.25
No protein-ligand interaction detected (PLIP)LDA.24: 4 residues within 4Å:- Chain C: Y.18, W.21, I.28
- Ligands: LDA.16
2 PLIP interactions:2 interactions with chain C- Hydrophobic interactions: C:W.21, C:I.28
- 2 x GOL: GLYCEROL(Non-functional Binders)
GOL.20: 8 residues within 4Å:- Chain A: I.113, G.114, Y.115
- Chain B: E.2, Q.4, R.228
- Chain C: L.241
- Ligands: LDA.17
5 PLIP interactions:1 interactions with chain A, 4 interactions with chain B- Hydrogen bonds: A:Y.115, B:Q.4, B:Q.4, B:R.228, B:R.228
GOL.25: 2 residues within 4Å:- Chain C: N.201, R.202
4 PLIP interactions:4 interactions with chain C- Hydrogen bonds: C:N.201, C:N.201, C:R.202, C:R.202
- 1 x K: POTASSIUM ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Roszak, A.W. et al., Brominated Lipids Identify Lipid Binding Sites on the Surface of the Reaction Center from Rhodobacter sphaeroides. Biochemistry (2007)
- Release Date
- 2007-03-27
- Peptides
- Reaction center protein L chain: A
Reaction center protein M chain: B
Reaction center protein H chain: C - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
LB
MC
H - Membrane
-
We predict this structure to be a membrane protein.
SMTL ID : 2hj6.1
Reaction centre from Rhodobacter sphaeroides strain R-26.1 complexed with dibrominated phosphatidylserine
Reaction center protein L chain
Reaction center protein M chain
Reaction center protein H chain
Related Entries With Identical Sequence
1aig.1 | 1aig.2 | 1aij.1 | 1aij.2 | 1ds8.1 | 1ds8.2 | 1dv3.1 | 1dv3.2 | 1dv6.1 | 1dv6.2 | 1e14.1 | 1e6d.1 | 1f6n.1 | 1fnp.1 | 1fnq.1 | 1jgw.1 | 1jgx.1 | 1jgy.1 | 1jgz.1 | 1jh0.1 | 1k6l.1 | 1k6n.1 | 1kby.1 | 1l9b.1 | 1l9j.1 | 1l9j.2 | 1m3x.1 | 1mps.1 | 1ogv.1 | 1pcr.1 more...less...1qov.1 | 1rg5.1 | 1rgn.1 | 1rqk.1 | 1ry5.1 | 1rzh.1 | 1rzz.1 | 1rzz.2 | 1s00.1 | 1s00.2 | 1umx.1 | 1yf6.1 | 1yst.1 | 1z9j.1 | 1z9k.1 | 1z9k.2 | 2bnp.1 | 2bns.1 | 2boz.1 | 2gmr.1 | 2gnu.1 | 2hg3.1 | 2hg9.1 | 2hh1.1 | 2hhk.1 | 2hit.1 | 2j8c.1 | 2j8d.1 | 2jiy.1 | 2jj0.1 | 2rcr.1 | 2uws.1 | 2uwt.1 | 2uwu.1 | 2uwv.1 | 2uww.1 | 2ux3.1 | 2ux4.1 | 2ux5.1 | 2uxj.1 | 2uxk.1 | 2uxl.1 | 2uxm.1 | 2wx5.1 | 3dsy.1 | 3dta.1 | 3dtr.1 | 3dts.1 | 3du2.1 | 3du3.1 | 3duq.1 | 3i4d.1 | 3zum.1 | 3zuw.1 | 4h99.1 | 4h9l.1 | 4hbh.1 | 4hbj.1 | 4in6.1 | 4lwy.1 | 4n7k.1 | 4n7l.1 | 4rcr.1 | 4tqq.1 | 4v9g.30 | 4v9g.62 | 5lri.1 | 5lse.1 | 7pil.1 | 7pqd.30 | 7pqd.31 | 7pqd.65 | 7pqd.66 | 7va9.3 | 7va9.35 | 7vb9.1 | 7vnm.1 | 7vny.1 | 7vor.3 | 7vor.36 | 7vot.3 | 7vot.36 | 7voy.1