- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.30 Å
- Oligo State
- hetero-1-1-1-mer
- Ligands
- 7 x LDA: LAURYL DIMETHYLAMINE-N-OXIDE(Non-covalent)
- 4 x BCL: BACTERIOCHLOROPHYLL A(Non-covalent)
BCL.3: 28 residues within 4Å:- Chain B: F.97, A.124, I.125, A.127, Y.128, L.131, W.156, V.157, S.158, T.160, G.161, Y.162, N.166, F.167, H.168, H.173, A.176, I.177, F.180, S.244, A.245, C.247, M.248
- Chain C: Y.210
- Ligands: BCL.4, BPH.5, BCL.7, BCL.8
16 PLIP interactions:15 interactions with chain B, 1 interactions with chain C,- Hydrophobic interactions: B:F.97, B:F.97, B:A.124, B:A.127, B:V.157, B:T.160, B:Y.162, B:F.167, B:A.176, B:I.177, B:I.177, B:F.180, B:F.180, C:Y.210
- Hydrogen bonds: B:S.244
- Metal complexes: B:H.173
BCL.4: 20 residues within 4Å:- Chain B: I.46, Y.128, L.131, F.146, I.150, W.151, H.153, L.154, V.157
- Chain C: G.203, I.206, A.207, Y.210, G.211, L.214
- Ligands: BCL.3, BPH.5, BCL.8, U10.11, LDA.13
10 PLIP interactions:6 interactions with chain B, 4 interactions with chain C,- Hydrophobic interactions: B:I.46, B:Y.128, B:L.131, B:F.146, B:L.154, C:I.206, C:I.206, C:L.214
- Metal complexes: B:H.153
- pi-Stacking: C:Y.210
BCL.7: 18 residues within 4Å:- Chain B: H.168, M.174, I.177, S.178, F.181, T.182
- Chain C: M.122, W.157, L.160, I.179, H.182, L.183, T.186
- Ligands: BCL.3, U10.6, BCL.8, BPH.9, SPN.12
6 PLIP interactions:3 interactions with chain B, 3 interactions with chain C,- Hydrophobic interactions: B:I.177, B:I.177, C:L.160, C:L.183
- pi-Stacking: B:F.181
- Metal complexes: C:H.182
BCL.8: 25 residues within 4Å:- Chain B: V.157, Y.162, F.181
- Chain C: M.122, A.153, L.156, W.157, L.160, T.186, N.187, F.189, S.190, L.196, H.202, S.205, I.206, Y.210, V.276, G.280, I.284
- Ligands: BCL.3, BCL.4, BCL.7, BPH.9, LDA.17
10 PLIP interactions:10 interactions with chain C,- Hydrophobic interactions: C:A.153, C:L.156, C:W.157, C:T.186, C:F.189, C:L.196, C:I.206, C:Y.210, C:V.276
- Metal complexes: C:H.202
- 2 x BPH: BACTERIOPHEOPHYTIN A(Non-covalent)
BPH.5: 26 residues within 4Å:- Chain B: F.41, A.93, A.96, F.97, W.100, E.104, I.117, A.120, F.121, F.123, A.124, Y.148, G.149, I.150, H.153, V.241
- Chain C: Y.210, A.213, L.214, A.217, M.218, W.252, M.256
- Ligands: BCL.3, BCL.4, U10.11
15 PLIP interactions:11 interactions with chain B, 4 interactions with chain C- Hydrophobic interactions: B:A.96, B:A.120, B:F.121, B:F.121, B:F.121, B:F.123, B:Y.148, B:I.150, B:V.241, B:V.241, C:Y.210, C:A.213, C:L.214, C:A.217
- Hydrogen bonds: B:E.104
BPH.9: 19 residues within 4Å:- Chain B: F.181, A.184, L.185, L.189, L.219
- Chain C: S.59, L.60, G.63, F.67, V.126, W.129, T.146, A.149, F.150, A.153, A.273, T.277
- Ligands: BCL.7, BCL.8
11 PLIP interactions:8 interactions with chain C, 3 interactions with chain B- Hydrophobic interactions: C:L.60, C:F.67, C:A.149, C:F.150, C:F.150, C:A.153, C:T.277, B:F.181, B:A.184, B:L.189
- pi-Stacking: C:F.150
- 2 x U10: UBIQUINONE-10(Non-covalent)
U10.6: 13 residues within 4Å:- Chain B: P.171, S.178, F.179, L.189, H.190, L.193, F.216, Y.222, S.223, I.224, G.225, I.229
- Ligands: BCL.7
6 PLIP interactions:6 interactions with chain B- Hydrophobic interactions: B:P.171, B:F.179, B:L.189
- Hydrogen bonds: B:I.224
- Water bridges: B:G.225
- pi-Stacking: B:F.216
U10.11: 21 residues within 4Å:- Chain B: G.35, T.38, W.100, R.103
- Chain C: M.218, H.219, T.222, A.248, A.249, W.252, M.256, F.258, N.259, A.260, T.261, M.262, I.265, W.268, M.272
- Ligands: BCL.4, BPH.5
12 PLIP interactions:8 interactions with chain C, 4 interactions with chain B- Hydrophobic interactions: C:M.218, C:W.252, C:M.256, C:F.258, C:F.258, C:W.268, C:W.268, B:T.38, B:W.100, B:W.100, B:W.100
- Hydrogen bonds: C:A.260
- 1 x FE: FE (III) ION(Non-covalent)
- 1 x SPN: SPEROIDENONE(Non-covalent)
SPN.12: 21 residues within 4Å:- Chain C: F.67, F.68, I.70, G.71, F.74, W.75, F.85, S.119, F.120, M.122, W.157, L.160, G.161, F.162, W.171, V.175, Y.177, G.178, I.179, H.182
- Ligands: BCL.7
15 PLIP interactions:15 interactions with chain C- Hydrophobic interactions: C:F.67, C:F.67, C:F.67, C:I.70, C:F.74, C:F.85, C:F.120, C:W.157, C:L.160, C:F.162, C:F.162, C:W.171, C:V.175, C:V.175, C:I.179
- 2 x PO4: PHOSPHATE ION(Non-functional Binders)
PO4.18: 6 residues within 4Å:- Chain B: N.199
- Chain C: H.145, R.267
- Ligands: LDA.1, LDA.15, PO4.19
3 PLIP interactions:2 interactions with chain C, 1 interactions with chain B- Salt bridges: C:H.145, C:R.267
- Hydrogen bonds: B:N.199
PO4.19: 6 residues within 4Å:- Chain C: G.143, K.144, H.145, W.148
- Ligands: LDA.15, PO4.18
5 PLIP interactions:5 interactions with chain C- Hydrogen bonds: C:K.144, C:W.148
- Water bridges: C:K.144, C:K.144
- Salt bridges: C:H.145
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ridge, J.P. et al., An Examination of How Structural Changes Can Affect the Rate of Electron Transfer in a Mutated Bacterial Photoreaction Centre. Biochem.J. (2000)
- Release Date
- 2000-10-30
- Peptides
- PHOTOSYNTHETIC REACTION CENTER H SUBUNIT: A
PHOTOSYNTHETIC REACTION CENTER L SUBUNIT: B
PHOTOSYNTHETIC REACTION CENTER M SUBUNIT: C - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
HB
LC
M - Membrane
-
We predict this structure to be a membrane protein.
SMTL ID : 1e6d.1
PHOTOSYNTHETIC REACTION CENTER MUTANT WITH TRP M115 REPLACED WITH PHE (CHAIN M, WM115F) PHE M197 REPLACED WITH ARG (CHAIN M, FM197R)
PHOTOSYNTHETIC REACTION CENTER H SUBUNIT
PHOTOSYNTHETIC REACTION CENTER L SUBUNIT
PHOTOSYNTHETIC REACTION CENTER M SUBUNIT
Related Entries With Identical Sequence
1aig.1 | 1aig.2 | 1aij.1 | 1aij.2 | 1ds8.1 | 1ds8.2 | 1dv3.1 | 1dv3.2 | 1dv6.1 | 1dv6.2 | 1e14.1 | 1f6n.1 | 1fnp.1 | 1fnq.1 | 1jgw.1 | 1jgx.1 | 1jgy.1 | 1jgz.1 | 1jh0.1 | 1k6l.1 | 1k6n.1 | 1kby.1 | 1l9b.1 | 1l9j.1 | 1l9j.2 | 1m3x.1 | 1mps.1 | 1ogv.1 | 1pcr.1 | 1qov.1 more...less...1rg5.1 | 1rgn.1 | 1rqk.1 | 1ry5.1 | 1rzh.1 | 1rzz.1 | 1rzz.2 | 1s00.1 | 1s00.2 | 1umx.1 | 1yf6.1 | 1yst.1 | 1z9j.1 | 1z9k.1 | 1z9k.2 | 2bnp.1 | 2bns.1 | 2boz.1 | 2gmr.1 | 2gnu.1 | 2hg3.1 | 2hg9.1 | 2hh1.1 | 2hhk.1 | 2hit.1 | 2hj6.1 | 2j8c.1 | 2j8d.1 | 2jiy.1 | 2jj0.1 | 2rcr.1 | 2uws.1 | 2uwt.1 | 2uwu.1 | 2uwv.1 | 2uww.1 | 2ux3.1 | 2ux4.1 | 2ux5.1 | 2uxj.1 | 2uxk.1 | 2uxl.1 | 2uxm.1 | 2wx5.1 | 3dsy.1 | 3dta.1 | 3dtr.1 | 3dts.1 | 3du2.1 | 3du3.1 | 3duq.1 | 3i4d.1 | 3zum.1 | 3zuw.1 | 4h99.1 | 4h9l.1 | 4hbh.1 | 4hbj.1 | 4in6.1 | 4lwy.1 | 4n7k.1 | 4n7l.1 | 4rcr.1 | 4tqq.1 | 4v9g.30 | 4v9g.62 | 5lri.1 | 5lse.1 | 7pil.1 | 7pqd.30 | 7pqd.65 | 7va9.3 | 7va9.35 | 7vb9.1 | 7vnm.1 | 7vny.1 | 7vor.3 | 7vor.36 | 7vot.3 | 7vot.36 | 7voy.1 | 8vtj.1 | 8vtk.1 | 8vtl.1 | 8vtm.1 | 8vtn.1 | 8vto.1