- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.04 Å
- Oligo State
- hetero-1-1-1-mer
- Ligands
- 6 x GOL: GLYCEROL(Non-functional Binders)
- 4 x BCL: BACTERIOCHLOROPHYLL A(Non-covalent)
BCL.5: 20 residues within 4Å:- Chain B: I.46, I.49, Y.128, L.131, F.146, I.150, H.153, L.154
- Chain C: F.197, G.203, I.206, A.207, Y.210, G.211, L.214
- Ligands: LDA.6, BPH.9, BCL.11, BCL.18, LDA.19
13 PLIP interactions:8 interactions with chain B, 5 interactions with chain C,- Hydrophobic interactions: B:I.46, B:I.49, B:Y.128, B:L.131, B:F.146, B:F.146, B:L.154, C:F.197, C:I.206, C:I.206, C:L.214
- Metal complexes: B:H.153
- pi-Stacking: C:Y.210
BCL.11: 29 residues within 4Å:- Chain B: F.97, A.124, I.125, A.127, Y.128, L.131, W.156, V.157, S.158, T.160, G.161, Y.162, N.166, F.167, H.168, H.173, A.176, I.177, F.180, S.244, A.245, C.247, M.248
- Chain C: Y.210
- Ligands: BCL.5, BPH.9, BCL.17, BCL.18, U10.27
16 PLIP interactions:15 interactions with chain B, 1 interactions with chain C,- Hydrophobic interactions: B:F.97, B:F.97, B:F.97, B:A.127, B:Y.128, B:T.160, B:Y.162, B:F.167, B:A.176, B:I.177, B:I.177, B:F.180, B:F.180, C:Y.210
- Hydrogen bonds: B:S.244
- Metal complexes: B:H.173
BCL.17: 18 residues within 4Å:- Chain B: H.168, M.174, I.177, S.178, F.181, T.182
- Chain C: M.122, W.157, V.175, I.179, H.182, L.183, T.186
- Ligands: LDA.7, BCL.11, BCL.18, BPH.26, SPO.28
8 PLIP interactions:4 interactions with chain C, 4 interactions with chain B,- Hydrophobic interactions: C:V.175, C:I.179, C:L.183, B:I.177, B:I.177
- Metal complexes: C:H.182
- Hydrogen bonds: B:T.182
- pi-Stacking: B:F.181
BCL.18: 29 residues within 4Å:- Chain B: V.157, Y.162, H.168, F.181
- Chain C: M.122, V.126, A.153, L.156, W.157, L.160, T.186, N.187, F.189, S.190, L.196, F.197, H.202, S.205, I.206, L.209, Y.210, V.276, T.277, G.280, I.284
- Ligands: BCL.5, BCL.11, BCL.17, BPH.26
13 PLIP interactions:12 interactions with chain C, 1 interactions with chain B,- Hydrophobic interactions: C:V.126, C:L.156, C:T.186, C:N.187, C:F.189, C:L.196, C:F.197, C:I.206, C:L.209, C:Y.210, C:V.276, B:V.157
- Metal complexes: C:H.202
- 9 x LDA: LAURYL DIMETHYLAMINE-N-OXIDE(Non-covalent)
LDA.6: 3 residues within 4Å:- Chain B: P.61, Y.148
- Ligands: BCL.5
1 PLIP interactions:1 interactions with chain B- Hydrophobic interactions: B:P.61
LDA.7: 6 residues within 4Å:- Chain B: P.171, M.174, S.178, W.262
- Ligands: LDA.8, BCL.17
2 PLIP interactions:2 interactions with chain B- Hydrophobic interactions: B:P.171, B:M.174
LDA.8: 2 residues within 4Å:- Chain B: S.178
- Ligands: LDA.7
No protein-ligand interaction detected (PLIP)LDA.19: 12 residues within 4Å:- Chain A: W.21, I.28, L.31
- Chain C: P.200, G.203, L.204, A.207, F.208, W.268, M.272
- Ligands: BCL.5, LDA.21
8 PLIP interactions:5 interactions with chain C, 3 interactions with chain A- Hydrophobic interactions: C:A.207, C:F.208, C:W.268, C:W.268, A:W.21, A:I.28, A:L.31
- Hydrogen bonds: C:P.200
LDA.20: 5 residues within 4Å:- Chain C: F.7, S.8, L.38, W.41, F.42
4 PLIP interactions:4 interactions with chain C- Hydrophobic interactions: C:L.38, C:W.41, C:F.42
- pi-Cation interactions: C:W.41
LDA.21: 9 residues within 4Å:- Chain A: I.28, Q.32, Y.40, F.56
- Chain C: R.253, F.258
- Ligands: LDA.19, LDA.22, U10.27
10 PLIP interactions:6 interactions with chain C, 4 interactions with chain A- Hydrophobic interactions: C:F.258, C:F.258, C:F.258, C:F.258, A:I.28, A:Q.32, A:F.56
- Hydrogen bonds: C:R.253, C:R.253, A:Y.40
LDA.22: 7 residues within 4Å:- Chain B: P.28, F.29
- Chain C: M.256, G.257, F.258
- Ligands: LDA.21, U10.27
2 PLIP interactions:2 interactions with chain C- Hydrophobic interactions: C:F.258, C:F.258
LDA.23: 8 residues within 4Å:- Chain B: V.220, G.221
- Chain C: S.30, G.31, V.32, G.33
- Ligands: UQ2.10, LDA.24
1 PLIP interactions:1 interactions with chain C- Water bridges: C:G.31
LDA.24: 5 residues within 4Å:- Chain C: I.50, L.52, W.129
- Ligands: LDA.23, BPH.26
2 PLIP interactions:2 interactions with chain C- Hydrophobic interactions: C:I.50, C:W.129
- 2 x BPH: BACTERIOPHEOPHYTIN A(Non-covalent)
BPH.9: 32 residues within 4Å:- Chain B: T.38, F.41, I.49, C.92, A.93, A.96, F.97, W.100, E.104, I.117, A.120, F.121, F.123, A.124, Y.128, Y.148, G.149, I.150, H.153, L.238, V.241
- Chain C: Y.210, A.213, L.214, A.217, M.218, W.252, T.255, M.256
- Ligands: BCL.5, BCL.11, U10.27
17 PLIP interactions:14 interactions with chain B, 3 interactions with chain C- Hydrophobic interactions: B:I.49, B:A.96, B:A.120, B:F.121, B:F.121, B:F.121, B:F.123, B:Y.128, B:Y.148, B:Y.148, B:I.150, B:L.238, B:V.241, B:V.241, C:Y.210, C:A.213, C:L.214
BPH.26: 26 residues within 4Å:- Chain B: F.181, A.184, L.185, L.189, F.216, L.219
- Chain C: S.59, L.60, G.63, L.64, W.66, F.67, A.125, V.126, W.129, T.133, T.146, A.149, F.150, A.153, A.273, V.274, T.277
- Ligands: BCL.17, BCL.18, LDA.24
16 PLIP interactions:12 interactions with chain C, 4 interactions with chain B- Hydrophobic interactions: C:L.64, C:W.66, C:F.67, C:A.125, C:W.129, C:W.129, C:A.149, C:F.150, C:F.150, C:F.150, C:A.153, C:T.277, B:F.181, B:A.184, B:L.185, B:L.189
- 1 x UQ2: UBIQUINONE-2(Non-covalent)
UQ2.10: 14 residues within 4Å:- Chain B: A.186, L.189, H.190, L.193, F.216, Y.222, S.223, I.224, G.225, I.229, L.232
- Chain C: L.39, L.47
- Ligands: LDA.23
6 PLIP interactions:2 interactions with chain C, 4 interactions with chain B- Hydrophobic interactions: C:L.39, C:L.47, B:Y.222, B:L.232
- Hydrogen bonds: B:I.224
- pi-Stacking: B:F.216
- 1 x PO4: PHOSPHATE ION(Non-functional Binders)
- 2 x HTO: HEPTANE-1,2,3-TRIOL(Non-covalent)
- 1 x FE: FE (III) ION(Non-covalent)
- 1 x U10: UBIQUINONE-10(Non-covalent)
U10.27: 26 residues within 4Å:- Chain B: F.29, Y.30, G.35, W.100, R.103
- Chain C: L.214, M.218, H.219, T.222, I.223, A.248, A.249, W.252, M.256, F.258, N.259, A.260, T.261, M.262, I.265, W.268, M.272
- Ligands: BPH.9, BCL.11, LDA.21, LDA.22
15 PLIP interactions:4 interactions with chain B, 11 interactions with chain C- Hydrophobic interactions: B:F.29, B:F.29, B:W.100, B:W.100, C:L.214, C:M.218, C:W.252, C:M.256, C:F.258, C:F.258, C:I.265, C:W.268, C:W.268
- Hydrogen bonds: C:T.222, C:A.260
- 1 x SPO: SPHEROIDENE(Non-covalent)
SPO.28: 22 residues within 4Å:- Chain C: F.67, I.70, G.71, F.74, W.75, F.85, L.89, W.115, S.119, F.120, M.122, W.157, L.160, G.161, F.162, W.171, V.175, Y.177, G.178, I.179, H.182
- Ligands: BCL.17
18 PLIP interactions:18 interactions with chain C- Hydrophobic interactions: C:F.67, C:F.67, C:F.67, C:I.70, C:I.70, C:F.74, C:F.85, C:L.89, C:W.115, C:W.157, C:L.160, C:F.162, C:F.162, C:F.162, C:W.171, C:V.175, C:V.175, C:I.179
- 1 x CDL: CARDIOLIPIN(Non-covalent)
CDL.29: 16 residues within 4Å:- Chain A: I.22, F.23, G.26, L.27, Y.30
- Chain B: N.199, P.200
- Chain C: G.143, K.144, H.145, W.148, W.155, R.267, W.271, L.278
- Ligands: GOL.1
18 PLIP interactions:12 interactions with chain C, 6 interactions with chain A- Hydrophobic interactions: C:W.148, C:W.148, C:W.155, C:W.155, C:W.271, C:L.278, A:I.22, A:F.23, A:F.23, A:F.23, A:Y.30
- Hydrogen bonds: C:K.144, C:H.145
- Salt bridges: C:H.145, C:H.145, C:H.145, C:R.267
- Water bridges: A:Y.30
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Koepke, J. et al., Ph Modulates the Quinone Position in the Photosynthetic Reaction Center from Rhodobacter Sphaeroides in the Neutral and Charge Separated States. J.Mol.Biol. (2007)
- Release Date
- 2007-07-03
- Peptides
- REACTION CENTER PROTEIN H CHAIN: A
REACTION CENTER PROTEIN L CHAIN: B
REACTION CENTER PROTEIN M CHAIN: C - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
HB
LC
M - Membrane
-
We predict this structure to be a membrane protein.
SMTL ID : 2uwu.1
X-ray high resolution structure of the photosynthetic reaction center from Rb. sphaeroides at pH 6.5 in the neutral state, 2nd dataset
REACTION CENTER PROTEIN H CHAIN
REACTION CENTER PROTEIN L CHAIN
REACTION CENTER PROTEIN M CHAIN
Related Entries With Identical Sequence
1aig.1 | 1aig.2 | 1aij.1 | 1aij.2 | 1ds8.1 | 1ds8.2 | 1dv3.1 | 1dv3.2 | 1dv6.1 | 1dv6.2 | 1e14.1 | 1e6d.1 | 1f6n.1 | 1fnp.1 | 1fnq.1 | 1jgw.1 | 1jgx.1 | 1jgy.1 | 1jgz.1 | 1jh0.1 | 1k6l.1 | 1k6n.1 | 1kby.1 | 1l9b.1 | 1l9j.1 | 1l9j.2 | 1m3x.1 | 1mps.1 | 1ogv.1 | 1pcr.1 more...less...1qov.1 | 1rg5.1 | 1rgn.1 | 1rqk.1 | 1ry5.1 | 1rzh.1 | 1rzz.1 | 1rzz.2 | 1s00.1 | 1s00.2 | 1umx.1 | 1yf6.1 | 1yst.1 | 1z9j.1 | 1z9k.1 | 1z9k.2 | 2bnp.1 | 2bns.1 | 2boz.1 | 2gmr.1 | 2gnu.1 | 2hg3.1 | 2hg9.1 | 2hh1.1 | 2hhk.1 | 2hit.1 | 2hj6.1 | 2j8c.1 | 2j8d.1 | 2jiy.1 | 2jj0.1 | 2rcr.1 | 2uws.1 | 2uwt.1 | 2uwv.1 | 2uww.1 | 2ux3.1 | 2ux4.1 | 2ux5.1 | 2uxj.1 | 2uxk.1 | 2uxl.1 | 2uxm.1 | 2wx5.1 | 3dsy.1 | 3dta.1 | 3dtr.1 | 3dts.1 | 3du2.1 | 3du3.1 | 3duq.1 | 3i4d.1 | 3zum.1 | 3zuw.1 | 4h99.1 | 4h9l.1 | 4hbh.1 | 4hbj.1 | 4in6.1 | 4lwy.1 | 4n7k.1 | 4n7l.1 | 4rcr.1 | 4tqq.1 | 4v9g.30 | 4v9g.62 | 5lri.1 | 5lse.1 | 7pil.1 | 7va9.3 | 7va9.35 | 7vb9.1 | 7vnm.1 | 7vny.1 | 7vor.3 | 7vor.36 | 7vot.3 | 7vot.36 | 7voy.1 | 8vtj.1 | 8vtk.1 | 8vtl.1 | 8vtm.1 | 8vtn.1 | 8vto.1