- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.50 Å
- Oligo State
- hetero-1-1-1-mer
- Ligands
- 6 x GOL: GLYCEROL(Non-functional Binders)4 x BCL: BACTERIOCHLOROPHYLL A(Non-covalent)
BCL.5: 18 residues within 4Å:- Chain C: F.197, G.203, I.206, A.207, Y.210, G.211, L.214
- Chain B: I.49, Y.128, L.131, F.146, I.150, H.153, L.154, V.157
- Ligands: BPH.7, BCL.9, LDA.17
14 PLIP interactions:6 interactions with chain C, 8 interactions with chain B,- Hydrophobic interactions: C:F.197, C:I.206, C:I.206, C:Y.210, C:L.214, B:I.49, B:Y.128, B:L.131, B:F.146, B:F.146, B:L.154, B:V.157
- pi-Stacking: C:Y.210
- Metal complexes: B:H.153
BCL.9: 28 residues within 4Å:- Chain C: Y.210
- Chain B: F.97, A.124, I.125, A.127, Y.128, L.131, W.156, V.157, S.158, T.160, Y.162, N.166, F.167, H.168, H.173, A.176, I.177, F.180, S.244, A.245, C.247, M.248
- Ligands: BCL.5, BPH.7, BCL.15, BCL.16, U10.26
15 PLIP interactions:1 interactions with chain C, 14 interactions with chain B,- Hydrophobic interactions: C:Y.210, B:F.97, B:F.97, B:F.97, B:A.127, B:T.160, B:Y.162, B:F.167, B:A.176, B:I.177, B:I.177, B:F.180, B:F.180
- Hydrogen bonds: B:S.244
- Metal complexes: B:H.173
BCL.15: 18 residues within 4Å:- Chain C: F.67, M.122, L.160, I.179, H.182, L.183, T.186
- Chain B: H.168, M.174, I.177, S.178, F.181, T.182
- Ligands: BCL.9, BCL.16, LDA.23, BPH.25, SPO.27
8 PLIP interactions:4 interactions with chain C, 4 interactions with chain B,- Hydrophobic interactions: C:F.67, C:L.160, C:L.183, B:I.177, B:I.177
- Hydrogen bonds: B:T.182
- Metal complexes: C:H.182
- pi-Stacking: B:F.181
BCL.16: 29 residues within 4Å:- Chain C: M.122, V.126, A.153, L.156, W.157, L.160, T.186, N.187, F.189, S.190, N.195, L.196, F.197, H.202, S.205, I.206, L.209, Y.210, V.276, G.280, I.284
- Chain B: V.157, Y.162, H.168, F.181
- Ligands: BCL.9, BCL.15, LDA.22, BPH.25
13 PLIP interactions:12 interactions with chain C, 1 interactions with chain B,- Hydrophobic interactions: C:V.126, C:L.156, C:T.186, C:F.189, C:L.196, C:F.197, C:I.206, C:L.209, C:Y.210, C:V.276, C:I.284, B:V.157
- Metal complexes: C:H.202
9 x LDA: LAURYL DIMETHYLAMINE-N-OXIDE(Non-covalent)LDA.6: 1 residues within 4Å:- Chain B: Y.148
No protein-ligand interaction detected (PLIP)LDA.14: 2 residues within 4Å:- Chain B: F.179
- Ligands: UQ2.8
No protein-ligand interaction detected (PLIP)LDA.17: 8 residues within 4Å:- Chain C: P.200, L.204, A.207, F.208, W.268, M.272
- Ligands: BCL.5, LDA.19
3 PLIP interactions:3 interactions with chain C- Hydrophobic interactions: C:F.208, C:W.268
- Hydrogen bonds: C:P.200
LDA.18: 5 residues within 4Å:- Chain C: F.7, L.38, L.39, W.41, F.42
5 PLIP interactions:5 interactions with chain C- Hydrophobic interactions: C:L.39, C:W.41, C:F.42, C:F.42
- pi-Cation interactions: C:W.41
LDA.19: 8 residues within 4Å:- Chain A: Q.32, Y.40, F.56
- Chain C: R.253, F.258
- Ligands: LDA.17, LDA.20, U10.26
9 PLIP interactions:3 interactions with chain A, 6 interactions with chain C- Hydrophobic interactions: A:Q.32, A:F.56, C:F.258, C:F.258, C:F.258, C:F.258
- Hydrogen bonds: A:Y.40, C:R.253, C:R.253
LDA.20: 5 residues within 4Å:- Chain C: M.256, G.257
- Chain B: P.28
- Ligands: LDA.19, U10.26
No protein-ligand interaction detected (PLIP)LDA.21: 7 residues within 4Å:- Chain C: G.31, V.32, G.33, L.47
- Chain B: V.220, G.221
- Ligands: LDA.22
1 PLIP interactions:1 interactions with chain C- Hydrophobic interactions: C:L.47
LDA.22: 6 residues within 4Å:- Chain C: L.52, W.129
- Chain B: V.220
- Ligands: BCL.16, LDA.21, BPH.25
1 PLIP interactions:1 interactions with chain C- Hydrophobic interactions: C:W.129
LDA.23: 2 residues within 4Å:- Chain B: W.263
- Ligands: BCL.15
1 PLIP interactions:1 interactions with chain B- Hydrophobic interactions: B:W.263
2 x BPH: BACTERIOPHEOPHYTIN A(Non-covalent)BPH.7: 32 residues within 4Å:- Chain C: Y.210, A.213, L.214, A.217, M.218, W.252, T.255, M.256
- Chain B: T.38, F.41, A.42, I.49, A.93, A.96, F.97, W.100, E.104, I.117, A.120, F.121, F.123, A.124, Y.128, Y.148, G.149, I.150, H.153, L.238, V.241
- Ligands: BCL.5, BCL.9, U10.26
20 PLIP interactions:3 interactions with chain C, 17 interactions with chain B- Hydrophobic interactions: C:Y.210, C:A.213, C:A.217, B:A.42, B:I.49, B:A.96, B:A.120, B:F.121, B:F.121, B:F.121, B:F.123, B:A.124, B:Y.128, B:Y.148, B:Y.148, B:L.238, B:V.241, B:V.241
- Hydrogen bonds: B:W.100, B:E.104
BPH.25: 22 residues within 4Å:- Chain C: S.59, G.63, W.66, F.67, A.125, V.126, W.129, T.133, T.146, A.149, F.150, A.153, A.273, T.277
- Chain B: F.181, A.184, L.185, L.189, L.219
- Ligands: BCL.15, BCL.16, LDA.22
13 PLIP interactions:10 interactions with chain C, 3 interactions with chain B- Hydrophobic interactions: C:W.66, C:F.67, C:A.125, C:W.129, C:W.129, C:A.149, C:F.150, C:F.150, C:F.150, B:F.181, B:A.184, B:L.185
- Hydrogen bonds: C:W.129
1 x UQ2: UBIQUINONE-2(Non-covalent)UQ2.8: 15 residues within 4Å:- Chain B: T.182, L.189, H.190, L.193, V.194, E.212, D.213, F.216, S.223, I.224, G.225, T.226, I.229, L.232
- Ligands: LDA.14
12 PLIP interactions:12 interactions with chain B- Hydrophobic interactions: B:T.182, B:L.189, B:L.189, B:L.193, B:F.216, B:F.216, B:I.224, B:I.229, B:L.232
- Hydrogen bonds: B:H.190, B:I.224, B:G.225
1 x U10: UBIQUINONE-10(Non-covalent)U10.26: 24 residues within 4Å:- Chain C: M.218, H.219, T.222, A.248, A.249, W.252, M.256, F.258, N.259, A.260, T.261, M.262, I.265, W.268, M.272
- Chain B: F.29, Y.30, G.35, W.100, R.103
- Ligands: BPH.7, BCL.9, LDA.19, LDA.20
15 PLIP interactions:11 interactions with chain C, 4 interactions with chain B- Hydrophobic interactions: C:M.218, C:W.252, C:M.256, C:F.258, C:F.258, C:A.260, C:I.265, C:W.268, C:W.268, B:F.29, B:F.29, B:W.100, B:W.100
- Hydrogen bonds: C:T.222, C:A.260
1 x SPO: SPHEROIDENE(Non-covalent)SPO.27: 23 residues within 4Å:- Chain C: F.67, I.70, G.71, F.74, W.75, L.89, F.105, W.115, S.119, F.120, M.122, F.123, W.157, L.160, G.161, F.162, W.171, V.175, Y.177, G.178, I.179, H.182
- Ligands: BCL.15
21 PLIP interactions:21 interactions with chain C- Hydrophobic interactions: C:F.67, C:F.67, C:F.67, C:I.70, C:I.70, C:F.74, C:L.89, C:F.105, C:W.115, C:F.123, C:W.157, C:L.160, C:F.162, C:F.162, C:W.171, C:V.175, C:V.175, C:Y.177, C:Y.177, C:I.179
- Hydrogen bonds: C:W.75
1 x CDL: CARDIOLIPIN(Non-covalent)CDL.28: 15 residues within 4Å:- Chain A: I.22, F.23, G.26, Y.30
- Chain C: G.143, K.144, H.145, W.148, W.155, R.267, W.271, L.278
- Chain B: N.199, P.200
- Ligands: GOL.1
16 PLIP interactions:2 interactions with chain A, 14 interactions with chain C- Hydrophobic interactions: A:I.22, A:F.23, C:W.148, C:W.148, C:W.148, C:W.155, C:W.271, C:L.278
- Hydrogen bonds: C:K.144, C:W.148
- Salt bridges: C:H.145, C:H.145, C:H.145, C:R.267
- Water bridges: C:K.144, C:K.144
- Links
- RCSB PDBe PDBj PDBsum CATH PLIP
- Citation
-
Koepke, J. et al., Ph Modulates the Quinone Position in the Photosynthetic Reaction Center from Rhodobacter Sphaeroides in the Neutral and Charge Separated States. J.Mol.Biol. (2007)
- Release Date
- 2007-07-03
- Peptides
- REACTION CENTER PROTEIN H CHAIN: A
REACTION CENTER PROTEIN L CHAIN: B
REACTION CENTER PROTEIN M CHAIN: C - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
HB
LC
M
SMTL ID : 2ux3.1
X-ray high resolution structure of the photosynthetic reaction center from Rb. sphaeroides at pH 9 in the neutral state
REACTION CENTER PROTEIN H CHAIN
REACTION CENTER PROTEIN L CHAIN
REACTION CENTER PROTEIN M CHAIN
Related Entries With Identical Sequence
1aig.1 | 1aig.2 | 1aij.1 | 1aij.2 | 1ds8.1 | 1ds8.2 | 1dv3.1 | 1dv3.2 | 1dv6.1 | 1dv6.2 | 1e14.1 | 1e6d.1 | 1f6n.1 | 1fnp.1 | 1fnq.1 | 1jgw.1 | 1jgx.1 | 1jgy.1 | 1jgz.1 | 1jh0.1 | 1k6l.1 | 1k6n.1 | 1kby.1 | 1l9b.1 | 1l9j.1 | 1l9j.2 | 1m3x.1 | 1mps.1 | 1ogv.1 | 1pcr.1 more...less...1qov.1 |
1rg5.1 |
1rgn.1 |
1rqk.1 |
1ry5.1 |
1rzh.1 |
1rzz.1 |
1rzz.2 |
1s00.1 |
1s00.2 |
1umx.1 |
1yf6.1 |
1yst.1 |
1z9j.1 |
1z9k.1 |
1z9k.2 |
2bnp.1 |
2bns.1 |
2boz.1 |
2gmr.1 |
2gnu.1 |
2hg3.1 |
2hg9.1 |
2hh1.1 |
2hhk.1 |
2hit.1 |
2hj6.1 |
2j8c.1 |
2j8d.1 |
2jiy.1 |
2jj0.1 |
2rcr.1 |
2uws.1 |
2uwt.1 |
2uwu.1 |
2uwv.1 |
2uww.1 |
2ux4.1 |
2ux5.1 |
2uxj.1 |
2uxk.1 |
2uxl.1 |
2uxm.1 |
2wx5.1 |
3dsy.1 |
3dta.1 |
3dtr.1 |
3dts.1 |
3du2.1 |
3du3.1 |
3duq.1 |
3i4d.1 |
3zum.1 |
3zuw.1 |
4h99.1 |
4h9l.1 |
4hbh.1 |
4hbj.1 |
4in6.1 |
4lwy.1 |
4n7k.1 |
4n7l.1 |
4rcr.1 |
4tqq.1 |
4v9g.30 |
4v9g.62 |
5lri.1 |
5lse.1