SMTL ID : 9d89.1

E. coli 50S ribosomal subunit in complex with PrAMP rumicidin-2 (focused refinement)

Coordinates
PDB Format
Method
ELECTRON MICROSCOPY
Oligo State
hetero-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-mer
Ligands
1 x ZN: ZINC ION(Non-covalent)
204 x MG: MAGNESIUM ION(Non-functional Binders)(Non-covalent)
93 x K: POTASSIUM ION(Non-functional Binders)(Non-covalent)
1 x MS6: (2S)-2-amino-4-(methylsulfanyl)butane-1-thiol(Covalent)
Links
RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP
Citation
Panteleev, P.V. et al., Rumicidins are a family of mammalian host-defense peptides plugging the 70S ribosome exit tunnel. Nat Commun (2024)
Release Date
2025-01-22
Peptides
50S ribosomal protein L33: A
50S ribosomal protein L34: B
50S ribosomal protein L35: C
50S ribosomal protein L36: D
50S ribosomal protein L2: G
50S ribosomal protein L3: H
50S ribosomal protein L4: I
50S ribosomal protein L15: J
50S ribosomal protein L17: K
Large ribosomal subunit protein uL23: L
50S ribosomal protein L27: M
50S ribosomal protein L32: N
50S ribosomal protein L5: O
Large ribosomal subunit protein uL6: P
50S ribosomal protein L9: Q
Large ribosomal subunit protein uL13: R
50S ribosomal protein L14: S
50S ribosomal protein L16: T
50S ribosomal protein L18: U
50S ribosomal protein L19: V
Large ribosomal subunit protein bL20: W
50S ribosomal protein L21: X
50S ribosomal protein L22: Y
Large ribosomal subunit protein uL24: Z
Large ribosomal subunit protein bL25: 0
50S ribosomal protein L28: 1
Large ribosomal subunit protein uL29: 2
50S ribosomal protein L30: 3
Rumicidin-2 (12-27): 4
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
0
B
1
C
B
D
C
G
F
H
G
I
H
J
I
K
J
L
K
M
L
N
M
O
f
P
g
Q
h
R
i
S
j
T
l
U
n
V
o
W
p
X
q
Y
r
Z
t
0
u
1
w
2
x
3
y
4
T

50S ribosomal protein L33

50S ribosomal protein L34

50S ribosomal protein L35

50S ribosomal protein L36

50S ribosomal protein L2

50S ribosomal protein L3

50S ribosomal protein L4

50S ribosomal protein L15

50S ribosomal protein L17

Large ribosomal subunit protein uL23

50S ribosomal protein L27

50S ribosomal protein L32

50S ribosomal protein L5

Large ribosomal subunit protein uL6

50S ribosomal protein L9

Large ribosomal subunit protein uL13

50S ribosomal protein L14

50S ribosomal protein L16

50S ribosomal protein L18

50S ribosomal protein L19

Large ribosomal subunit protein bL20

50S ribosomal protein L21

50S ribosomal protein L22

Large ribosomal subunit protein uL24

Large ribosomal subunit protein bL25

50S ribosomal protein L28

Large ribosomal subunit protein uL29

50S ribosomal protein L30

Rumicidin-2 (12-27)

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