SMTL ID : 9d4b.2 (1 other biounit)

Discovery of SMD-3236, a Potent, Highly Selective and Efficacious SMARCA2 Degrader for the Treatment of SMARC4-Deficient Human Cancers

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.30 Å

Oligo State

hetero-1-1-1-1-mer

Ligands

1 x 01: (4R)-1-[(2S)-2-{4-[(1S,4S)-4-({4-[(12'S)-4'-chloro-5'-oxo-5'H-spiro[cyclohexane-1,7'-indolo[1,2-a]quinazolin]-10'-yl]piperidin-1-yl}methyl)cyclohexyl]-1H-1,2,3-triazol-1-yl}-3,3-dimethylbutanoyl]-4-hydroxy-N-[(1R)-1-[4-(4-methyl-1,3-thiazol-5-yl)phenyl]-2-(morpholin-4-yl)ethyl]-L-prolinamide

01.1: 27 residues within 4Å: Chain A: R.17, F.24, P.34, W.36, F.39, Y.46, P.47, R.55, I.57, H.58, S.59, Y.60, H.63, W.65 Chain D: V.38, F.39, Q.41, L.42, P.43, L.48, Y.51, V.59, L.86, A.90, F.93, N.94, I.100 23 PLIP interactions: 15 interactions with chain A, 8 interactions with chain D Hydrophobic interactions: A:R.17, A:W.36, A:W.36, A:Y.46, A:P.47, A:I.57, A:I.57, A:Y.60, A:W.65, D:L.42, D:L.48, D:F.93, D:I.100 Hydrogen bonds: A:R.55, A:H.58, A:S.59, A:Y.60, A:H.63, D:N.94 pi-Stacking: A:Y.60, D:F.39, D:Y.51 Halogen bonds: D:L.86

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Strickland, C., Discovery of SMD-3236, a Potent, Highly Selective and Efficacious SMARCA2 Degrader for the Treatment of SMARC4-Deficient Human Cancers. To Be Published

Release Date

2025-08-20

Peptides

von Hippel-Lindau disease tumor suppressor: A
Elongin-B: B
Elongin-C: C
Probable global transcription activator SNF2L2: D

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

B
E

C
F

D
H

von Hippel-Lindau disease tumor suppressor

Elongin-B

Elongin-C

Probable global transcription activator SNF2L2

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