The SWISS-MODEL Repository is a database of annotated 3D protein structure models generated by the SWISS-MODEL homology-modelling pipeline.

Bienert S, Waterhouse A, de Beer TA, Tauriello G, Studer G, Bordoli L, Schwede T (2017). The SWISS-MODEL Repository - new features and functionality Nucleic Acids Res. 45(D1):D313-D319.

The aim of the SWISS-MODEL Repository is to provide access to an up-to-date collection of annotated 3D protein models generated by automated homology modelling for relevant model organisms and experimental structure information for all sequences in UniProtKB. Regular updates ensure that target coverage is complete, that models are built using the most recent sequence and template structure databases, and that improvements in the underlying modelling pipeline are fully utilised. It also allows users to assess the quality of the models using the latest QMEAN results. If a sequence has not been modelled, the user can build models interactively via the SWISS-MODEL workspace.

Currently the repository contains 982,480 models from SWISS-MODEL for UniProt targets as well as 122,671 structures from PDB with mapping to UniProt.

We currently provide models for the reference proteomes of the following model organisms, based on UniProt release 2017_04.

Proteome Size
(Canonical sequences)
Sequences ModelledModelsSeq CoverageDownload Metadata
Homo sapiens21,04216,06942,315
5.0 MB
Mus musculus22,26217,36942,339
3.8 MB
Caenorhabditis elegans20,05711,16421,612
1.9 MB
Escherichia coli4,3063,3435,881
886.0 KB
Arabidopsis thaliana27,50217,37233,532
3.0 MB
Drosophila melanogaster13,6408,80418,681
1.7 MB
Saccharomyces cerevisiae6,7224,2927,383
1022.4 KB
Caulobacter crescentus3,7202,7224,998
454.5 KB
Mycobacterium tuberculosis3,9932,9744,988
533.9 KB
Pseudomonas aeruginosa5,5624,3668,437
804.5 KB
Staphylococcus aureus2,8891,9673,399
320.4 KB
Plasmodium falciparum5,3603,0035,527
542.4 KB
Latest snapshot of SMR was taken 1 week, 5 days ago.
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