O15530 (PDPK1_HUMAN) Homo sapiens (Human)

3-phosphoinositide-dependent protein kinase 1 UniProtKBInterProSTRINGInteractive Modelling

556 aa; Sequence (Fasta) ; (Isoform 2; Isoform 3; Isoform 4; Isoform 5)

Available Structures

70 Experimental Structures

DescriptionPDB IDOligo-stateRangeLigands
Crystal structure of PDK1 in complex with ATP and PIFtide
4rrv
 Heteromer
Q16513; 		76-359
1×ATP; 2×GOL;
Assess
Crystal structure of WDR5 in complex with the WIN peptide of PDPK1
6wjq
 Heteromer
P61964; 		2-11
Assess
High resolution crystal structure of the human PDK1 catalytic domain
1h1w
homo-2-mer71-359
16×GOL; 10×SO4; 2×ATP;
Assess
Crystal structure of PDK1 in complex with a pyrazoloquinazoline inhibitor
2xch
homo-2-mer73-359
2×CKG; 12×GOL; 12×SO4;
Assess
Crystal structure of PDK1 in complex with a pyrazoloquinazoline inhibitor
2xck
homo-2-mer76-359
2×MH4; 8×GOL; 6×SO4;
Assess
Human PDK1 Kinase Domain in Complex with Allosteric Compound PS210 Bound to the PIF-Pocket
4aw1
monomer66-359
1×ATP; 1×21O; 2×DMS; 1×MN; 2×NA; 3×CL;
Assess
Human PDK1 kinase domain in complex with Valsartan
8dqt
monomer70-359
3×U35; 1×GOL;
Assess
Crystal structure of PDK1 in complex with ATP and the PIF-pocket ligand RF4
4xx9
monomer71-359
1×ATP; 2×RF4; 3×GOL;
Assess
Crystal structure of PDK1 in complex with ATP and the PIF-pocket ligand RS2
4rqv
monomer71-359
4×GOL; 1×ATP; 1×R2S;
Assess
Structure of human PDK1 kinase domain in complex with staurosporine
1oky
monomer72-360
3×GOL; 5×SO4; 1×STU;
Assess
Structure of human PDK1 kinase domain in complex with BIM-8
1uvr
monomer71-359
8×GOL; 4×SO4; 1×BI8;
Assess
DISCOVERY OF NOVEL 7-AZAINDOLES AS PDK1 INHIBITORS
5ho7
monomer71-359
1×63L; 1×SO4;
Assess
DISCOVERY OF NOVEL 7-AZAINDOLES AS PDK1 INHIBITORS
5hng
monomer71-359
2×SO4; 1×62O;
Assess
Crystal structure of an extender (SPD28345)-modified human PDK1 complex 2
3pwy
monomer71-359
1×SYP;
Assess
Structure of human PDK1 kinase domain in complex with LY333531
1uu3
monomer73-360
8×GOL; 7×SO4; 1×LY4;
Assess
Structure of PDK1-S241A mutant kinase domain
2biy
monomer72-359
7×GOL; 7×SO4; 1×ATP;
Assess
Phosphoinositide-Dependent Kinase-1 (PDK1) kinase domain with 1,1-Dimethylethyl {(3R,6S)-1-[2-amino…
3qd3
monomer71-358
1×3Q5; 1×SO4; 2×GOL;
Assess
phosphoinositide-dependent kinase-1 (PDK1) with lead compound
3nun
monomer71-358
4×GOL; 6×SO4; 1×JMZ;
Assess
Phosphoinositide-Dependent Kinase-1 (PDK1) kinase domain with 1,1-Dimethylethyl{(3R,5R)-1-[2-amino-…
3qd4
monomer71-358
1×3Q6; 1×SO4;
Assess
Discovery of a Novel, Potent and Selective Inhibitor of 3-Phosphoinositide Dependent Kinase (PDK1)
3rwq
monomer72-359
1×3RW; 3×GOL; 7×SO4;
Assess
DISCOVERY OF NOVEL 7-AZAINDOLES AS PDK1 INHIBITORS
5ho8
monomer71-358
1×63E; 4×SO4;
Assess
Human PDK1 Kinase Domain in Complex with Allosteric Compound PSE10 Bound to the PIF-Pocket
5lvo
monomer73-359
1×ATP; 1×78W; 1×DMS; 1×DTD; 1×CL;
Assess
Human PDK1 Kinase Domain in Complex with Allosteric Compound 7 Bound to the PIF-Pocket
5ack
monomer73-359
1×ATP; 1×SVQ; 1×DTD; 1×DMS; 3×NA;
Assess
Structure of human PDK1 kinase domain in complex with BIM-2
1uu7
monomer73-359
4×GOL; 1×BI2; 4×SO4;
Assess
Discovery of a Novel, Potent and Selective Inhibitor of 3-Phosphoinositide Dependent Kinase (PDK1)
3rwp
monomer73-359
4×GOL; 6×SO4; 1×ABQ;
Assess
Structure of human PDK1 kinase domain in complex with BIM-1
1uu8
monomer72-358
7×GOL; 3×SO4; 1×BI1;
Assess
Structure of human PDK1 kinase domain in complex with UCN-01
1okz
monomer73-359
6×GOL; 5×SO4; 1×UCN;
Assess
PDK1 in complex with inhibitor MP6
3nay
monomer76-362
1×MP6;
Assess
Novel Isoquinolone PDK1 Inhibitors Discovered through Fragment-Based Lead Discovery
3sc1
monomer73-359
1×3S1; 4×SO4; 2×GOL;
Assess
Human PDK1 Kinase Domain in Complex with Compound PS653 Bound to the ATP-Binding Site
5lvl
monomer74-359
1×537; 1×DTD; 3×DMS;
Assess
Crystal structure of PDK1 in complex with ATP and the PIF-pocket ligand RS1
4rqk
monomer74-359
2×GOL; 1×ATP; 1×R1S; 1×EPE;
Assess
Structure of human PDK1 kinase domain in complex with BIM-3
1uu9
monomer72-357
8×GOL; 5×SO4; 1×BI3;
Assess
phosphoinositide-dependent kinase-1 (PDK1) with fragment11
3nuu
monomer73-358
4×GOL; 10×SO4; 1×JOZ;
Assess
Phosphoinositide-Dependent Kinase-1 (PDK1) kinase domain with (2R,5S)-1-[2-Amino-6-(3-amino-1H-inda…
3qd0
monomer73-358
5×GOL; 5×SO4; 1×3Q4;
Assess
PDK1 mutant bound to allosteric disulfide fragment activator 2A2
3orz
monomer74-359
1×2A2; 1×BI4;
Assess
phosphoinositide-dependent kinase-1 (PDK1) with fragment17
3nuy
monomer73-358
4×GOL; 3×SO4; 1×JPZ;
Assess
CRYSTAL STRUCTURE OF HUMAN PHOSPHOINOSITIDE-DEPENDENT PROTEIN KINASE 1 (PDK1) 3-{5-[2-Oxo-5-ureido-…
2pe2
monomer74-359
3×SO4; 1×464; 8×GOL;
Assess
CRYSTAL STRUCTURE OF HUMAN PHOSPHOINOSITIDE-DEPENDENT PROTEIN KINASE 1 (PDK1) {2-Oxo-3-[1-(1H-pyrro…
2pe1
monomer74-359
2×SO4; 1×517; 4×GOL;
Assess
Crystal Structure Of N1-[3-[[5-bromo-2-[[3-[(1-pyrrolidinylcarbonyl)amino]phenyl]amino]-4-pyrimidin…
1z5m
monomer74-359
1×SO4; 1×CL; 1×LI8; 3×GOL;
Assess
Phosphoinositide-Dependent Kinase-1 (PDK1) kinase domain with 4-[2-Amino-6-(3-amino-1H-indazol-6-yl…
3qcy
monomer73-358
4×GOL; 6×SO4; 1×3Q3;
Assess
Phosphoinositide-Dependent Kinase-1 (PDK1) kinase domain with 6-{2-Amino-6-[(3R)-3-methyl-4-morphol…
3qcx
monomer73-358
5×GOL; 6×SO4; 1×3Q2;
Assess
CRYSTAL STRUCTURE OF HUMAN PHOSPHOINOSITIDE-DEPENDENT PROTEIN KINASE 1 (PDK1) 5-Hydroxy-3-[1-(1H-py…
2pe0
monomer74-359
2×SO4; 1×39Z; 3×GOL;
Assess
Phosphoinositide-Dependent Kinase-1 (PDK1) kinase domain with 6-[2-Amino-6-(4-morpholinyl)-4-pyrimi…
3qcs
monomer73-358
4×GOL; 5×SO4; 1×3Q1;
Assess
Phosphoinositide-Dependent Kinase-1 (PDK1) kinase domain with 6-(3-Amino-1H-indazol-6-yl)-N4-ethyl-…
3qcq
monomer73-358
4×GOL; 3×SO4; 1×3Q0;
Assess
phosphoinositide-dependent kinase-1 (PDK1) with fragment8
3nus
monomer73-358
4×GOL; 1×JNZ; 3×SO4;
Assess
Human PDK1-PKCzeta Kinase Chimera
4ct2
monomer75-359
1×ATP; 1×DTD; 1×NA;
Assess
Human PDK1 Kinase Domain in Complex with Adenosine Bound to the ATP-Binding Site
5lvn
monomer75-359
1×DTD; 1×ADN; 1×CL;
Assess
Human PDK1 Kinase Domain in Complex with Allosteric Compound PS182 Bound to the PIF-Pocket
4aw0
monomer75-359
1×ATP; 1×MJF; 1×DMS; 2×MG; 1×DTD;
Assess
PDK1 in complex with inhibitor MP7
3nax
monomer76-360
1×MP7;
Assess
Human PDK1 Kinase Domain in Complex with Allosteric Activator PS171 Bound to the PIF-Pocket
4a07
monomer75-359
1×ATP; 2×AZ7; 1×MG; 5×CL;
Assess
Crystal structure of Human PDK1 kinase domain in complex with an allosteric activator bound to the …
3hrf
monomer75-359
1×ATP; 1×P47; 2×EPE;
Assess
Human PDK1 Kinase Domain in Complex with Allosteric Activator PS114 Bound to the PIF-Pocket
4a06
monomer75-359
1×ATP; 1×A06; 1×DMS; 8×CL;
Assess
PDK-1 in complex with the inhibitor Compound-8i
3iop
monomer75-359
1×8I1;
Assess
PDK1 mutant bound to allosteric disulfide fragment inhibitor 1F8
3orx
monomer75-359
1×1F8; 1×CL;
Assess
Phosphoinositide-dependent protein kinase 1 (PDK-1) in complex with compound 9
3h9o
monomer75-359
1×9BD;
Assess
PDK1 in complex with Compound 8h
3ion
monomer75-359
1×8H1; 1×SO4;
Assess
Human PDK1 Kinase Domain in Complex with an HM-Peptide Bound to the PIF-Pocket
5lvp
monomer75-359
1×ATP;
Assess
Crystal Structure of the Phosphoinositide-dependent Kinase-1 (PDK-1)Catalytic Domain bound to a dib…
2r7b
monomer75-359
1×SO4; 1×253;
Assess
Human PDK1 Kinase Domain in Complex with Adenine Bound to the ATP-Binding Site
5lvm
monomer76-359
1×ADE; 1×DTD;
Assess
Human PDK1-PKCiota Kinase Chimera in Complex with Allosteric Compound PS267 Bound to the PIF-Pocket
5mrd
monomer76-359
1×S26; 1×DTT; 2×DMS; 1×ATP;
Assess
PDK1 in complex with DFG-OUT inhibitor xxx
3qc4
monomer76-359
1×MP7;
Assess
Human PDK1-PKCzeta Kinase Chimera in Complex with Allosteric Compound PS315 Bound to the PIF-Pocket
4ct1
monomer76-359
1×ATP; 1×31S; 1×DMS; 1×DTD;
Assess
Crystal structure of a mutant of human PDK1 Kinase domain in complex with ATP
3hrc
monomer76-359
1×ATP;
Assess
DISCOVERY OF NOVEL 7-AZAINDOLES AS PDK1 INHIBITORS
5hkm
monomer76-358
2×SO4; 1×61Y;
Assess
PDK1 mutant bound to allosteric disulfide fragment activator JS30
3otu
monomer77-359
1×J30; 1×BI4; 8×SO4; 2×CL;
Assess
Rapid preparation of triazolyl substituted NH-heterocyclic kinase inhibitors via one-pot Sonogashir…
3rcj
monomer77-358
1×3RC;
Assess
Crystal Structure of the PDK1 Pleckstrin Homology (PH) domain
1w1h
monomer410-556
1×GOL; 3×SO4;
Assess
Crystal Structure of the PDK1 Pleckstrin Homology (PH) domain bound to DiC4-phosphatidylinositol (3…
1w1g
monomer409-550
1×4PT;
Assess
Crystal Structure of the PDK1 Pleckstrin Homology (PH) domain bound to Inositol (1,3,4,5)-tetrakisp…
1w1d
monomer409-550
1×GOL; 1×AU; 1×4IP;
Assess
Structure of the PDK1 PH domain K465E mutant
2vki
monomer410-549
1×GOL; 1×SO4;
Assess

2 SWISS-MODEL models

TemplateOligo-stateQMEANDisCoRangeLigandsTrg-Tpl Seq id (%)
3rwq.1.Amonomer0.8572-359
1×3RW;100.00
Assess
4mvf.1.Amonomer0.5470-423
33.15
Assess

8 SWISS-MODEL models built on isoform sequence

TemplateIsoformOligo-stateQMEANDisCoRangeLigandsTrg-Tpl Seq id (%)
Isoform 22biy.1.Amonomer0.8622-308
1×ATP;99.68
Assess
Isoform 24mvf.1.Amonomer0.5420-373
33.24
Assess
Isoform 33qd3.1.Amonomer0.8471-332
1×3Q5;100.00
Assess
Isoform 34mvf.1.Amonomer0.5670-397
32.84
Assess
Isoform 41w1h.2.Amonomer0.82282-429
100.00
Assess
Isoform 43rwq.1.Amonomer0.7178-232
81.94
Assess
Isoform 52biy.1.Amonomer0.8772-358
1×ATP;99.68
Assess
Isoform 54mvf.1.Amonomer0.5370-423
33.15
Assess