Filter results by: Taxon Proteome
1 - 50 of 294 UniProtKB matches
(444 models, 781 structures.)
UniProtKB AC
(Name)		UniProtKB Section
 
Homology Model
 
Experimental Structure 		OrganismDescription
O43734
(CIKS_HUMAN) 		Swiss-Prot
Homo sapiens
(Human)		E3 ubiquitin ligase TRAF3IP2;
Adapter protein CIKS;
Connection to IKK and SAPK/JNK;
E3 ubiquitin-protein ligase CIKS;
Nuclear factor NF-kappa-B activator 1;
TRAF3-interacting protein 2;
P00813
(ADA_HUMAN) 		Swiss-Prot
Homo sapiens
(Human)		Adenosine deaminase;
Adenosine aminohydrolase;
P15918
(RAG1_HUMAN) 		Swiss-Prot
Homo sapiens
(Human)		V(D)J recombination-activating protein 1;
RING finger protein 74;
Endonuclease RAG1;
3.1.-.-;
E3 ubiquitin-protein ligase RAG1;
2.3.2.27;
RING-type E3 ubiquitin transferase RAG1;
Q8BJ56
(PLPL2_MOUSE) 		Swiss-Prot
Mus musculus
(Mouse)		Patatin-like phospholipase domain-containing protein 2;
Adipose triglyceride lipase;
Calcium-independent phospholipase A2-zeta;
Desnutrin;
P04913
(H2B1_SCHPO) 		Swiss-Prot
Schizosaccharomyces pombe
(strain 972 / ATCC 24843)		Histone H2B-alpha;
H2B.1;
P04909
(H2A1_SCHPO) 		Swiss-Prot
Schizosaccharomyces pombe
(strain 972 / ATCC 24843)		Histone H2A-alpha;
H2A.1;
P04910
(H2A2_SCHPO) 		Swiss-Prot
Schizosaccharomyces pombe
(strain 972 / ATCC 24843)		Histone H2A-beta;
H2A.2;
P09988
(H31_SCHPO) 		Swiss-Prot
Schizosaccharomyces pombe
(strain 972 / ATCC 24843)		Histone H3.1/H3.2;
P10651
(H33_SCHPO) 		Swiss-Prot
Schizosaccharomyces pombe
(strain 972 / ATCC 24843)		Histone H3.3;
P02293
(H2B1_YEAST) 		Swiss-Prot
Saccharomyces cerevisiae
(strain ATCC 204508 / S288c)		Histone H2B.1;
Suppressor of Ty protein 12;
P02294
(H2B2_YEAST) 		Swiss-Prot
Saccharomyces cerevisiae
(strain ATCC 204508 / S288c)		Histone H2B.2;
Q12692
(H2AZ_YEAST) 		Swiss-Prot
Saccharomyces cerevisiae
(strain ATCC 204508 / S288c)		Histone H2A.Z;
P04912
(H2A2_YEAST) 		Swiss-Prot
Saccharomyces cerevisiae
(strain ATCC 204508 / S288c)		Histone H2A.2;
P04911
(H2A1_YEAST) 		Swiss-Prot
Saccharomyces cerevisiae
(strain ATCC 204508 / S288c)		Histone H2A.1;
P61830
(H3_YEAST) 		Swiss-Prot
Saccharomyces cerevisiae
(strain ATCC 204508 / S288c)		Histone H3;
P12297
(SUWA_DROME) 		Swiss-Prot
Drosophila melanogaster
(Fruit fly)		Protein suppressor of white apricot;
Q96528
(CATA1_ARATH) 		Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)		Catalase-1;
Q42547
(CATA3_ARATH) 		Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)		Catalase-3;
F4HX80
(ALT4_ARATH) 		Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)		Acyl-acyl carrier protein thioesterase ATL4, chloroplastic;
Acyl-ACP thioesterase ATL4;
Acyl-lipid thioesterase 4;
Q94BR4
(PR19A_ARATH) 		Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)		Pre-mRNA-processing factor 19 homolog 1;
MOS4-associated complex protein 3A;
Plant U-box protein 59;
U-box domain-containing protein 59;
Q9SGE3
(H2B2_ARATH) 		Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)		Histone H2B.2;
HTB8;
Q1PDW5
(FTSH6_ARATH) 		Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)		ATP-dependent zinc metalloprotease FTSH 6, chloroplastic;
Q9LZ45
(H2B9_ARATH) 		Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)		Histone H2B.9;
HTB10;
Q9SF55
(H2B5_ARATH) 		Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)		Histone H2B.5;
HTB7;
Q9SI96
(H2B3_ARATH) 		Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)		Histone H2B.3;
Q9ZUS0
(H2B4_ARATH) 		Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)		Histone H2B.4;
HTB5;
Q9LFF6
(H2B8_ARATH) 		Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)		Histone H2B.8;
HTB6;
P12411
(TBB1_ARATH) 		Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)		Tubulin beta-1 chain;
Beta-1-tubulin;
Q9LQQ4
(H2B1_ARATH) 		Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)		Histone H2B.1;
Q9FFC0
(H2B10_ARATH) 		Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)		Histone H2B.10;
HTB2;
Q84W56
(RNJ_ARATH) 		Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)		Ribonuclease J;
Protein EMBRYO DEFECTIVE 2746;
O22785
(PR19B_ARATH) 		Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)		Pre-mRNA-processing factor 19 homolog 2;
MOS4-associated complex protein 3B;
Plant U-box protein 60;
RING-type E3 ubiquitin transferase PRP19 2;
U-box domain-containing protein 60;
Q9LZT0
(H2B7_ARATH) 		Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)		Histone H2B.7;
HTB11;
O23629
(H2B6_ARATH) 		Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)		Histone H2B.6;
H2BAt;
HTB9;
P40283
(H2B11_ARATH) 		Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)		Histone H2B.11;
HTB4;
Q9S9K7
(H2AXB_ARATH) 		Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)		Probable histone H2AXb;
HTA3;
O04848
(H2AXA_ARATH) 		Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)		Probable histone H2AXa;
HTA5;
P59226
(H31_ARATH) 		Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)		Histone H3.1;
P59169
(H33_ARATH) 		Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)		Histone H3.3;
Histone H3.2;
Q03134
(FDH_EMENI) 		Swiss-Prot
Emericella nidulans
(strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 /M139)		Formate dehydrogenase;
Acetate inducible protein A;
NAD-dependent formate dehydrogenase;
C0HMB1
(OXDD_CRYD2) 		Swiss-Prot
Cryptococcus deuterogattii
(strain R265)		D-aspartate oxidase;
CgDAO1;
D-amino-acid oxidase 1;
A0A095CCB2
(OXDA3_CRYD2) 		Swiss-Prot
Cryptococcus deuterogattii
(strain R265)		D-amino-acid oxidase 3;
CgDAO3;
D0EXD3
(AFP_PENCH) 		Swiss-Prot
Penicillium chrysogenum
(Penicillium notatum)		Antifungal protein B;
A0A1D8PN12
(GIT2_CANAL) 		Swiss-Prot
Candida albicans
(strain SC5314 / ATCC MYA-2876)		Glycerophosphodiester transporter GIT2;
A0A1D8PN14
(GIT4_CANAL) 		Swiss-Prot
Candida albicans
(strain SC5314 / ATCC MYA-2876)		Glycerophosphocholine permease GIT4;
Glycerophosphodiester transporter GIT4;
Q5A1L6
(GIT3_CANAL) 		Swiss-Prot
Candida albicans
(strain SC5314 / ATCC MYA-2876)		Major glycerophosphoinositol permease GIT3;
Glycerophosphodiester transporter GIT3;
A3AGM4
(H2B1_ORYSJ) 		Swiss-Prot
Oryza sativa subsp. japonica
(Rice)		Histone H2B.1;
A5U3S4
(DAO_MYCTA) 		Swiss-Prot
Mycobacterium tuberculosis
(strain ATCC 25177 / H37Ra)		D-amino-acid oxidase;
W0T3G1
(ATG31_KLUMD) 		Swiss-Prot
Kluyveromyces marxianus
(strain DMKU3-1042 / BCC 29191 / NBRC 104275(Yeast)		Autophagy-related protein 31;
Q4HTT1
(H2A_GIBZE) 		Swiss-Prot
Gibberella zeae
(strain ATCC MYA-4620 / CBS 123657 / FGSC 9075 / NRRL 31084/ PH-1)		Histone H2A;
1 - 50 of 294

The SWISS-MODEL Repository is a database of annotated 3D protein structure models generated by the SWISS-MODEL homology-modelling pipeline.

Bienert S, Waterhouse A, de Beer TAP, Tauriello G, Studer G, Bordoli L, Schwede T
The SWISS-MODEL Repository - new features and functionality.
Nucleic Acids Res 45, D313-D319. (2017) PubMed logo27899672DOI logo10.1093/nar/gkw1132

The aim of the SWISS-MODEL Repository is to provide access to an up-to-date collection of annotated 3D protein models generated by automated homology modelling for relevant model organisms and experimental structure information for all sequences in UniProtKB. Regular updates ensure that target coverage is complete, that models are built using the most recent sequence and template structure databases, and that improvements in the underlying modelling pipeline are fully utilised. It also allows users to assess the quality of the models using the latest QMEAN results. If a sequence has not been modelled, the user can build models interactively via the SWISS-MODEL workspace.

Currently the repository contains 3,461,922 models from SWISS-MODEL for UniProtKB targets as well as 218,360 structures from PDB with mapping to UniProtKB.

We currently provide models for the reference proteomes of the following model organisms, based on UniProtKB release 2025_01. If you want to download a large number of models, please contact us.

Proteome SizeSequences ModelledModelsSeq CoverageMetadata
(Homology models and
experimental structures)		Coordinates
(Homology models only)
Homo sapiens20,64417,56843,323
14.9 MB5.7 GB
Mus musculus21,75519,04143,690
7.8 MB4.0 GB
Caenorhabditis elegans19,82413,13523,409
3.6 MB1.7 GB
Escherichia coli4,4023,7306,298
2.2 MB496.5 MB
Arabidopsis thaliana27,44820,59838,175
5.5 MB2.7 GB
Drosophila melanogaster13,82210,20319,807
3.1 MB1.7 GB
Saccharomyces cerevisiae6,0654,7188,617
2.3 MB613.0 MB
Schizosaccharomyces pombe5,2614,3638,285
1.2 MB601.8 MB
Caulobacter vibrioides3,7202,9844,993
704.2 KB384.2 MB
Mycobacterium tuberculosis3,9963,3045,240
957.1 KB387.1 MB
Pseudomonas aeruginosa5,5634,8228,688
1.3 MB725.4 MB
Staphylococcus aureus2,8892,3773,788
608.9 KB257.3 MB
Plasmodium falciparum5,3613,7366,699
996.9 KB419.7 MB
Latest snapshot of SMR was taken 1 month, 3 weeks ago.