| UniProtKB AC (Name) | UniProtKB Section | Organism | Description | |
|---|---|---|---|---|
| Q9HC57 (WFDC1_HUMAN) | Swiss-Prot | Homo sapiens (Human) | WAP four-disulfide core domain protein 1; Prostate stromal protein ps20; ps20 growth inhibitor; | |
| O43240 (KLK10_HUMAN) | Swiss-Prot | Homo sapiens (Human) | Kallikrein-10; Normal epithelial cell-specific 1; Protease serine-like 1; | |
| Q8NDY4 (MDS2_HUMAN) | Swiss-Prot | Homo sapiens (Human) | Myelodysplastic syndrome 2 translocation-associated protein; | |
| P04216 (THY1_HUMAN) | Swiss-Prot | Homo sapiens (Human) | Thy-1 membrane glycoprotein; CDw90; Thy-1 antigen; CD90; | |
| P33552 (CKS2_HUMAN) | Swiss-Prot | Homo sapiens (Human) | Cyclin-dependent kinases regulatory subunit 2; | |
| Q969H9 (DIRC1_HUMAN) | Swiss-Prot | Homo sapiens (Human) | Disrupted in renal carcinoma protein 1; Disrupted in renal cancer protein; | |
| Q16559 (TAL2_HUMAN) | Swiss-Prot | Homo sapiens (Human) | T-cell acute lymphocytic leukemia protein 2; Class A basic helix-loop-helix protein 19; | |
| O00198 (HRK_HUMAN) | Swiss-Prot | Homo sapiens (Human) | Activator of apoptosis harakiri; BH3-interacting domain-containing protein 3; Neuronal death protein DP5; | |
| O95096 (NKX22_HUMAN) | Swiss-Prot | Homo sapiens (Human) | Homeobox protein Nkx-2.2; Homeobox protein NK-2 homolog B; | |
| P0C6P0 (BCL8_HUMAN) | Swiss-Prot | Homo sapiens (Human) | Putative protein BCL8; Neurobeachin pseudogene 1; | |
| P12980 (LYL1_HUMAN) | Swiss-Prot | Homo sapiens (Human) | Protein lyl-1; Class A basic helix-loop-helix protein 18; Lymphoblastic leukemia-derived sequence 1; | |
| Q92733 (PRCC_HUMAN) | Swiss-Prot | Homo sapiens (Human) | Proline-rich protein PRCC; Papillary renal cell carcinoma translocation-associated gene protein; | |
| Q9Y693 (LHPL6_HUMAN) | Swiss-Prot | Homo sapiens (Human) | LHFPL tetraspan subfamily member 6 protein; Lipoma HMGIC fusion partner; | |
| Q99811 (PRRX2_HUMAN) | Swiss-Prot | Homo sapiens (Human) | Paired mesoderm homeobox protein 2; Paired-related homeobox protein 2; | |
| Q7L311 (ARMX2_HUMAN) | Swiss-Prot | Homo sapiens (Human) | Armadillo repeat-containing X-linked protein 2; ARM protein lost in epithelial cancers on chromosome X 2; | |
| Q8TBR7 (TLC3A_HUMAN) | Swiss-Prot | Homo sapiens (Human) | TLC domain-containing protein 3A; Protein CT120; Protein FAM57A; | |
| Q13275 (SEM3F_HUMAN) | Swiss-Prot | Homo sapiens (Human) | Semaphorin-3F; Sema III/F; Semaphorin IV; | |
| Q01995 (TAGL_HUMAN) | Swiss-Prot | Homo sapiens (Human) | Transgelin; 22 kDa actin-binding protein; Protein WS3-10; Smooth muscle protein 22-alpha; | |
| O95661 (DIRA3_HUMAN) | Swiss-Prot | Homo sapiens (Human) | GTP-binding protein Di-Ras3; Distinct subgroup of the Ras family member 3; Rho-related GTP-binding protein RhoI; | |
| Q96EZ4 (MYEOV_HUMAN) | Swiss-Prot | Homo sapiens (Human) | Myeloma-overexpressed gene protein; Oncogene in multiple myeloma; | |
| O75362 (ZN217_HUMAN) | Swiss-Prot | Homo sapiens (Human) | Zinc finger protein 217; | |
| P25929 (NPY1R_HUMAN) | Swiss-Prot | Homo sapiens (Human) | Neuropeptide Y receptor type 1; | |
| P49908 (SEPP1_HUMAN) | Swiss-Prot | Homo sapiens (Human) | Selenoprotein P; | |
| Q9Y337 (KLK5_HUMAN) | Swiss-Prot | Homo sapiens (Human) | Kallikrein-5; Kallikrein-like protein 2; Stratum corneum tryptic enzyme; | |
| Q9BPW5 (RSLBB_HUMAN) | Swiss-Prot | Homo sapiens (Human) | Ras-like protein family member 11B; | |
| O76076 (CCN5_HUMAN) | Swiss-Prot | Homo sapiens (Human) | CCN family member 5; Connective tissue growth factor-like protein; Connective tissue growth factor-related protein 58; WNT1-inducible-signaling pathway protein 2; | |
| Q8TF68 (ZN384_HUMAN) | Swiss-Prot | Homo sapiens (Human) | Zinc finger protein 384; CAG repeat protein 1; CAS-interacting zinc finger protein; Nuclear matrix transcription factor 4; Trinucleotide repeat-containing gene 1 protein; | |
| P41217 (OX2G_HUMAN) | Swiss-Prot | Homo sapiens (Human) | OX-2 membrane glycoprotein; CD200; | |
| Q9UHE8 (STEA1_HUMAN) | Swiss-Prot | Homo sapiens (Human) | STEAP1 protein; Six-transmembrane epithelial antigen of prostate 1; | |
| P47928 (ID4_HUMAN) | Swiss-Prot | Homo sapiens (Human) | DNA-binding protein inhibitor ID-4; Class B basic helix-loop-helix protein 27; Inhibitor of DNA binding 4; Inhibitor of differentiation 4; | |
| Q9UD71 (PPR1B_HUMAN) | Swiss-Prot | Homo sapiens (Human) | Protein phosphatase 1 regulatory subunit 1B; DARPP-32; Dopamine- and cAMP-regulated neuronal phosphoprotein; | |
| Q15072 (OZF_HUMAN) | Swiss-Prot | Homo sapiens (Human) | Zinc finger protein OZF; Only zinc finger protein; Zinc finger protein 146; | |
| P36952 (SPB5_HUMAN) | Swiss-Prot | Homo sapiens (Human) | Serpin B5; Maspin; Peptidase inhibitor 5; | |
| O75094 (SLIT3_HUMAN) | Swiss-Prot | Homo sapiens (Human) | Slit homolog 3 protein; Multiple epidermal growth factor-like domains protein 5; | |
| P63313 (TYB10_HUMAN) | Swiss-Prot | Homo sapiens (Human) | Thymosin beta-10; | |
| P09668 (CATH_HUMAN) | Swiss-Prot | Homo sapiens (Human) | Pro-cathepsin H; Cathepsin H mini chain; Cathepsin H; 3.4.22.16; Cathepsin H heavy chain; Cathepsin H light chain; | |
| Q9Y5W5 (WIF1_HUMAN) | Swiss-Prot | Homo sapiens (Human) | Wnt inhibitory factor 1; | |
| P58062 (ISK7_HUMAN) | Swiss-Prot | Homo sapiens (Human) | Serine protease inhibitor Kazal-type 7; Esophagus cancer-related gene 2 protein; | |
| P31151 (S10A7_HUMAN) | Swiss-Prot | Homo sapiens (Human) | Protein S100-A7; Psoriasin; S100 calcium-binding protein A7; | |
| P49788 (TIG1_HUMAN) | Swiss-Prot | Homo sapiens (Human) | Retinoic acid receptor responder protein 1; Phorbol ester-induced gene 1 protein; RAR-responsive protein TIG1; Tazarotene-induced gene 1 protein; | |
| P04090 (REL2_HUMAN) | Swiss-Prot | Homo sapiens (Human) | Prorelaxin H2; Relaxin B chain; Relaxin A chain; | |
| P10082 (PYY_HUMAN) | Swiss-Prot | Homo sapiens (Human) | Peptide YY; PYY-I; Peptide tyrosine tyrosine; Peptide YY(3-36); PYY-II; | |
| P60022 (DEFB1_HUMAN) | Swiss-Prot | Homo sapiens (Human) | Beta-defensin 1; Defensin, beta 1; | |
| Q15506 (SP17_HUMAN) | Swiss-Prot | Homo sapiens (Human) | Sperm surface protein Sp17; Cancer/testis antigen 22; Sp17-1; Sperm autoantigenic protein 17; | |
| Q8WV07 (LTO1_HUMAN) | Swiss-Prot | Homo sapiens (Human) | Protein LTO1 homolog; Oral cancer-overexpressed protein 1; Tumor-amplified and overexpressed sequence 1; | |
| P51826 (AFF3_HUMAN) | Swiss-Prot | Homo sapiens (Human) | AF4/FMR2 family member 3; Lymphoid nuclear protein related to AF4; | |
| Q12864 (CAD17_HUMAN) | Swiss-Prot | Homo sapiens (Human) | Cadherin-17; Intestinal peptide-associated transporter HPT-1; Liver-intestine cadherin; | |
| P31270 (HXA11_HUMAN) | Swiss-Prot | Homo sapiens (Human) | Homeobox protein Hox-A11; Homeobox protein Hox-1I; | |
| P01303 (NPY_HUMAN) | Swiss-Prot | Homo sapiens (Human) | Pro-neuropeptide Y; Neuropeptide Y; Neuropeptide tyrosine; NPY; C-flanking peptide of NPY; CPON; | |
| P24347 (MMP11_HUMAN) | Swiss-Prot | Homo sapiens (Human) | Stromelysin-3; Matrix metalloproteinase-11; |
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The SWISS-MODEL Repository is a database of annotated 3D protein structure models generated by the SWISS-MODEL homology-modelling pipeline.
Bienert S, Waterhouse A, de Beer TAP, Tauriello G, Studer G, Bordoli L, Schwede T
The SWISS-MODEL Repository - new features and functionality.
Nucleic Acids Res 45, D313-D319. (2017) 
27899672
10.1093/nar/gkw1132
2789967210.1093/nar/gkw1132The aim of the SWISS-MODEL Repository is to provide access to an up-to-date collection of annotated 3D protein models generated by automated homology modelling for relevant model organisms and experimental structure information for all sequences in UniProtKB. Regular updates ensure that target coverage is complete, that models are built using the most recent sequence and template structure databases, and that improvements in the underlying modelling pipeline are fully utilised. It also allows users to assess the quality of the models using the latest QMEAN results. If a sequence has not been modelled, the user can build models interactively via the SWISS-MODEL workspace.
Currently the repository contains 3,463,316 models from SWISS-MODEL for UniProtKB targets as well as 218,360 structures from PDB with mapping to UniProtKB.
We currently provide models for the reference proteomes of the following model organisms, based on UniProtKB release 2025_01. If you want to download a large number of models, please contact us.
| Proteome Size | Sequences Modelled | Models | Seq Coverage | Metadata
(Homology models and experimental structures) | Coordinates
(Homology models only) | |
|---|---|---|---|---|---|---|
| Homo sapiens | 20,644 | 17,568 | 43,323 | 14.9 MB | 5.7 GB | |
| Mus musculus | 21,755 | 19,041 | 43,690 | 7.8 MB | 4.0 GB | |
| Caenorhabditis elegans | 19,824 | 13,135 | 23,409 | 3.6 MB | 1.7 GB | |
| Escherichia coli | 4,402 | 3,730 | 6,298 | 2.2 MB | 496.5 MB | |
| Arabidopsis thaliana | 27,448 | 20,598 | 38,175 | 5.5 MB | 2.7 GB | |
| Drosophila melanogaster | 13,822 | 10,203 | 19,807 | 3.1 MB | 1.7 GB | |
| Saccharomyces cerevisiae | 6,065 | 4,718 | 8,617 | 2.3 MB | 613.0 MB | |
| Schizosaccharomyces pombe | 5,261 | 4,363 | 8,285 | 1.2 MB | 601.8 MB | |
| Caulobacter vibrioides | 3,720 | 2,984 | 4,993 | 704.2 KB | 384.2 MB | |
| Mycobacterium tuberculosis | 3,996 | 3,304 | 5,240 | 957.1 KB | 387.1 MB | |
| Pseudomonas aeruginosa | 5,563 | 4,822 | 8,688 | 1.3 MB | 725.4 MB | |
| Staphylococcus aureus | 2,889 | 2,377 | 3,788 | 608.9 KB | 257.3 MB | |
| Plasmodium falciparum | 5,361 | 3,736 | 6,699 | 996.9 KB | 419.7 MB | |
| Latest snapshot of SMR was taken 1 month, 3 weeks ago. | ||||||