- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.30 Å
- Oligo State
- hetero-oligomer
- Ligands
- 11 x MN: MANGANESE (II) ION(Non-covalent)(Non-functional Binders)
MN.1: 1 residues within 4Å:- Chain G: D.77
5 PLIP interactions:1 interactions with chain G, 4 Ligand-Water interactions- Metal complexes: G:D.77, H2O.251, H2O.281, H2O.282, H2O.360
MN.2: 1 residues within 4Å:- Chain B: G.134
No protein-ligand interaction detected (PLIP)MN.3: 1 residues within 4Å:- Chain A: G.134
No protein-ligand interaction detected (PLIP)MN.4: 2 residues within 4Å:- Chain B: G.71, A.72
No protein-ligand interaction detected (PLIP)MN.5: 2 residues within 4Å:- Chain A: G.70, G.71
No protein-ligand interaction detected (PLIP)MN.6: 1 residues within 4Å:- Chain B: G.121
No protein-ligand interaction detected (PLIP)MN.7: 1 residues within 4Å:- Chain A: C.88
No protein-ligand interaction detected (PLIP)MN.8: 1 residues within 4Å:- Chain B: G.100
No protein-ligand interaction detected (PLIP)MN.9: 1 residues within 4Å:- Chain A: G.138
No protein-ligand interaction detected (PLIP)MN.10: 2 residues within 4Å:- Chain A: T.38, G.39
No protein-ligand interaction detected (PLIP)MN.11: 2 residues within 4Å:- Chain A: T.120, G.121
No protein-ligand interaction detected (PLIP)- 5 x IMT- PYB- PYB- PYB- ABU- PYB- PYB- PYB- PYB- BAL- DIB: 4-AMINO-(1-METHYLIMIDAZOLE)-2-CARBOXYLIC ACID(Non-functional Binders)
IMT-PYB-PYB-PYB-ABU-PYB-PYB-PYB-PYB-BAL-DIB.12: 16 residues within 4Å:- Chain A: G.31, T.32, G.33, T.34, A.35, T.36
- Chain B: T.112, A.113, C.114, A.115, C.116, T.117, T.118, T.119, T.120
- Chain E: A.14
1 PLIP interactions:1 interactions with chain E- Hydrophobic interactions: E:A.14
IMT-PYB-PYB-PYB-ABU-PYB-PYB-PYB-PYB-BAL-DIB.13: 16 residues within 4Å:- Chain A: G.40, A.41, A.42, A.43, C.44, T.45, G.46, C.47, T.48
- Chain B: A.102, G.103, T.104, T.105, T.106, C.107, C.108
No protein-ligand interaction detected (PLIP)IMT-PYB-PYB-PYB-ABU-PYB-PYB-PYB-PYB-BAL-DIB.14: 16 residues within 4Å:- Chain A: G.70, G.71, A.72, A.73, T.74, T.75, C.76
- Chain B: A.73, T.74, T.75, C.76, C.77, G.78, C.79, T.80, G.81
No protein-ligand interaction detected (PLIP)IMT-PYB-PYB-PYB-ABU-PYB-PYB-PYB-PYB-BAL-DIB.15: 16 residues within 4Å:- Chain A: A.102, G.103, T.104, T.105, T.106, C.107, C.108
- Chain B: A.41, A.42, A.43, C.44, T.45, G.46, C.47, T.48, C.49
No protein-ligand interaction detected (PLIP)IMT-PYB-PYB-PYB-ABU-PYB-PYB-PYB-PYB-BAL-DIB.16: 16 residues within 4Å:- Chain A: T.112, A.113, C.114, A.115, C.116, T.117, T.118, T.119
- Chain B: A.30, G.31, T.32, G.33, T.34, A.35, T.36, T.37
No protein-ligand interaction detected (PLIP)- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Suto, R.K. et al., Crystal Structures of Nucleosome Core Particles in Complex with Minor Groove DNA-binding Ligands. J.Mol.Biol. (2003)
- Release Date
- 2003-02-18
- Peptides
- Histone H3.2: CG
Histone H4: DH
Histone H2A.1: EI
Histone H2B.1: FJ - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:C
AG
ED
BH
FE
CI
GF
DJ
H
SMTL ID : 1m19.1
LIGAND BINDING ALTERS THE STRUCTURE AND DYNAMICS OF NUCLEOSOMAL DNA
Histone H3.2
Histone H4
Histone H2A.1
Histone H2B.1
Toggle Identical (FJ)Related Entries With Identical Sequence
1kx3.1 | 1kx4.1 | 1kx5.1 | 1m18.1 | 1m1a.1 | 1p34.1 | 1p3a.1 | 1p3b.1 | 1p3f.1 | 1p3g.1 | 1p3i.1 | 1p3k.1 | 1p3l.1 | 1p3m.1 | 1p3o.1 | 1p3p.1 | 1s32.1 | 1zbb.1 | 1zla.1 | 2fj7.1 | 2io5.1 | 2nzd.1 | 3b6f.1 | 3b6g.1 | 3c1b.1 | 3c1c.1 | 3c9k.1 | 3c9k.2 | 3kuy.1 | 3kxb.1 more...less...3lel.1 | 3lel.2 | 3lja.1 | 3lz0.1 | 3lz1.1 | 3mgp.1 | 3mgq.1 | 3mgr.1 | 3mgs.1 | 3mnn.1 | 3mvd.1 | 3o62.1 | 3reh.1 | 3rei.1 | 3rej.1 | 3rek.1 | 3rel.1 | 3tu4.1 | 3tu4.2 | 3ut9.1 | 3uta.1 | 3utb.1 | 3x1s.1 | 3x1t.1 | 3x1u.1 | 3x1v.1 | 4h9n.1 | 4h9o.1 | 4h9p.1 | 4h9p.2 | 4h9q.1 | 4h9q.2 | 4h9r.1 | 4h9r.2 | 4j8u.1 | 4j8v.1 | 4j8v.2 | 4j8v.3 | 4j8w.1 | 4j8x.1 | 4j8x.2 | 4j8x.3 | 4r8p.1 | 4wu8.1 | 4wu9.1 | 4xuj.1 | 5bnv.1 | 5bnx.1 | 5bo0.1 | 5bs7.1 | 5bsa.1 | 5cp6.1 | 5dnm.1 | 5dnn.1 | 5gsu.1 | 5gt0.1 | 5gt3.1 | 5hq2.1 | 5ja4.1 | 5kdm.1 | 5nl0.1 | 5nl0.2 | 5oxv.1 | 5oy7.1 | 5x0x.1 | 5x0y.1 | 5xf6.1 | 5z3l.1 | 5z3o.1 | 5z3u.1 | 5z3v.1 | 6esf.1 | 6esg.1 | 6esh.1 | 6esi.1 | 6fml.1 | 6iro.1 | 6jyl.1 | 6k1p.1 | 6kiu.1 | 6kiv.1 | 6kiw.1 | 6kix.1 | 6kiz.1 | 6nj9.1 | 6nn6.1 | 6nog.1 | 6nqa.1 | 6r1u.1 | 6r25.1 | 6s01.1 | 6t9l.1 | 6tda.1 | 6ugm.1 | 6uh5.1 | 6uxw.1 | 6ven.1 | 6vyp.1 | 6vyp.2 | 6wz5.1 | 6wz9.1 | 6x0n.1 | 6x59.1 | 6x5a.1 | 6xjd.1 | 7a08.1 | 7at8.1 | 7bwd.1 | 7ciz.1 | 7ciz.2 | 7ciz.3 | 7cj0.1 | 7cj0.2 | 7cro.1 | 7crp.1 | 7crq.1 | 7crr.1 | 7e8d.1 | 7e8i.1 | 7eg6.1 | 7egp.1 | 7enn.1 | 7jzv.1 | 7oh9.1 | 7oha.1 | 7ohb.1 | 7ohc.1 | 7swy.1 | 7tn2.1 | 7v1m.1 | 7v1m.2